Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21187 and SM_b21188 are separated by 343 nucleotides SM_b21188 and SM_b21189 are separated by 17 nucleotides
SM_b21187: SM_b21187 - LacI family transcriptional regulator, at 936,834 to 937,664
_b21187
SM_b21188: SM_b21188 - acyltransferase, at 938,008 to 939,141
_b21188
SM_b21189: SM_b21189 - glycosyltransferase, at 939,159 to 940,262
_b21189
Position (kb) 938
939
940 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 937.548 kb on + strand, within SM_b21187 at 937.548 kb on + strand, within SM_b21187 at 937.646 kb on + strand at 937.767 kb on - strand at 937.789 kb on + strand at 937.789 kb on + strand at 937.790 kb on - strand at 937.834 kb on + strand at 937.834 kb on + strand at 937.835 kb on - strand at 937.835 kb on - strand at 937.897 kb on + strand at 937.898 kb on - strand at 938.072 kb on - strand at 938.072 kb on - strand at 938.216 kb on - strand, within SM_b21188 at 938.221 kb on + strand, within SM_b21188 at 938.222 kb on - strand, within SM_b21188 at 938.254 kb on + strand, within SM_b21188 at 938.254 kb on + strand, within SM_b21188 at 938.329 kb on + strand, within SM_b21188 at 938.329 kb on + strand, within SM_b21188 at 938.329 kb on + strand, within SM_b21188 at 938.347 kb on + strand, within SM_b21188 at 938.388 kb on + strand, within SM_b21188 at 938.388 kb on + strand, within SM_b21188 at 938.419 kb on + strand, within SM_b21188 at 938.419 kb on + strand at 938.420 kb on - strand, within SM_b21188 at 938.516 kb on - strand, within SM_b21188 at 938.864 kb on - strand, within SM_b21188 at 938.987 kb on + strand, within SM_b21188 at 938.988 kb on - strand, within SM_b21188 at 939.051 kb on + strand at 939.210 kb on + strand at 939.211 kb on - strand at 939.249 kb on + strand at 939.250 kb on - strand at 939.250 kb on - strand at 939.372 kb on - strand, within SM_b21189 at 939.372 kb on - strand, within SM_b21189 at 939.373 kb on + strand, within SM_b21189 at 939.373 kb on + strand, within SM_b21189 at 939.373 kb on + strand, within SM_b21189 at 939.374 kb on - strand, within SM_b21189 at 939.571 kb on - strand, within SM_b21189 at 939.637 kb on - strand, within SM_b21189 at 939.637 kb on - strand, within SM_b21189 at 939.637 kb on - strand, within SM_b21189 at 939.644 kb on + strand, within SM_b21189 at 939.704 kb on - strand at 939.786 kb on - strand, within SM_b21189 at 939.996 kb on + strand, within SM_b21189 at 939.996 kb on + strand, within SM_b21189 at 939.997 kb on - strand, within SM_b21189 at 939.997 kb on - strand, within SM_b21189 at 940.032 kb on + strand, within SM_b21189 at 940.032 kb on + strand, within SM_b21189 at 940.126 kb on - strand, within SM_b21189
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 937,548 + SM_b21187 0.86 -2.2 937,548 + SM_b21187 0.86 -0.2 937,646 + +1.1 937,767 - -2.0 937,789 + +0.1 937,789 + -0.5 937,790 - -0.8 937,834 + +0.7 937,834 + -1.6 937,835 - -3.0 937,835 - +1.5 937,897 + +0.6 937,898 - -0.3 938,072 - +0.0 938,072 - +2.1 938,216 - SM_b21188 0.18 -0.4 938,221 + SM_b21188 0.19 -0.1 938,222 - SM_b21188 0.19 -1.5 938,254 + SM_b21188 0.22 +0.6 938,254 + SM_b21188 0.22 -2.3 938,329 + SM_b21188 0.28 -3.9 938,329 + SM_b21188 0.28 +1.1 938,329 + SM_b21188 0.28 -2.0 938,347 + SM_b21188 0.30 +2.3 938,388 + SM_b21188 0.34 +0.8 938,388 + SM_b21188 0.34 +0.7 938,419 + SM_b21188 0.36 -0.3 938,419 + +0.1 938,420 - SM_b21188 0.36 +2.1 938,516 - SM_b21188 0.45 +0.4 938,864 - SM_b21188 0.75 +1.6 938,987 + SM_b21188 0.86 -2.5 938,988 - SM_b21188 0.86 +0.2 939,051 + -1.9 939,210 + -3.6 939,211 - -1.1 939,249 + -0.6 939,250 - +0.8 939,250 - -1.3 939,372 - SM_b21189 0.19 +1.4 939,372 - SM_b21189 0.19 -2.4 939,373 + SM_b21189 0.19 -2.5 939,373 + SM_b21189 0.19 +1.9 939,373 + SM_b21189 0.19 +1.2 939,374 - SM_b21189 0.19 -0.0 939,571 - SM_b21189 0.37 +1.5 939,637 - SM_b21189 0.43 -0.7 939,637 - SM_b21189 0.43 -1.0 939,637 - SM_b21189 0.43 -1.7 939,644 + SM_b21189 0.44 -2.9 939,704 - +0.9 939,786 - SM_b21189 0.57 -2.1 939,996 + SM_b21189 0.76 +1.8 939,996 + SM_b21189 0.76 -1.9 939,997 - SM_b21189 0.76 -0.1 939,997 - SM_b21189 0.76 +1.0 940,032 + SM_b21189 0.79 +0.3 940,032 + SM_b21189 0.79 -0.9 940,126 - SM_b21189 0.88 +0.0
Or see this region's nucleotide sequence