Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21183 and SM_b21184 are separated by 104 nucleotides SM_b21184 and SM_b21185 are separated by 36 nucleotides
SM_b21183: SM_b21183 - molecular chaperone HtpG, at 930,553 to 932,442
_b21183
SM_b21184: SM_b21184 - acetate kinase, at 932,547 to 933,725
_b21184
SM_b21185: SM_b21185 - succinate-semialdehyde dehydrogenase (NAD(P)+) protein, at 933,762 to 935,237
_b21185
Position (kb) 932
933
934 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 931.620 kb on + strand, within SM_b21183 at 931.652 kb on - strand, within SM_b21183 at 931.652 kb on - strand, within SM_b21183 at 931.674 kb on - strand, within SM_b21183 at 931.705 kb on - strand, within SM_b21183 at 931.706 kb on + strand at 931.707 kb on - strand, within SM_b21183 at 931.896 kb on + strand, within SM_b21183 at 931.897 kb on - strand, within SM_b21183 at 931.897 kb on - strand, within SM_b21183 at 931.949 kb on + strand, within SM_b21183 at 932.045 kb on + strand, within SM_b21183 at 932.046 kb on - strand, within SM_b21183 at 932.046 kb on - strand, within SM_b21183 at 932.289 kb on - strand at 932.357 kb on + strand at 932.842 kb on - strand, within SM_b21184 at 933.030 kb on + strand, within SM_b21184 at 933.031 kb on - strand, within SM_b21184 at 933.051 kb on + strand, within SM_b21184 at 933.051 kb on + strand, within SM_b21184 at 933.051 kb on + strand, within SM_b21184 at 933.052 kb on - strand, within SM_b21184 at 933.099 kb on + strand, within SM_b21184 at 933.099 kb on + strand, within SM_b21184 at 933.099 kb on + strand, within SM_b21184 at 933.100 kb on - strand, within SM_b21184 at 933.100 kb on - strand, within SM_b21184 at 933.100 kb on - strand, within SM_b21184 at 933.100 kb on - strand, within SM_b21184 at 933.101 kb on + strand, within SM_b21184 at 933.101 kb on + strand, within SM_b21184 at 933.314 kb on + strand, within SM_b21184 at 933.314 kb on + strand, within SM_b21184 at 933.314 kb on + strand, within SM_b21184 at 933.524 kb on + strand, within SM_b21184 at 933.699 kb on - strand at 933.741 kb on + strand at 933.741 kb on + strand at 933.741 kb on + strand at 933.784 kb on + strand at 933.785 kb on - strand at 933.799 kb on + strand at 933.799 kb on + strand at 933.800 kb on - strand at 933.800 kb on - strand at 933.891 kb on - strand at 933.979 kb on + strand, within SM_b21185 at 933.979 kb on + strand, within SM_b21185 at 933.979 kb on + strand, within SM_b21185 at 933.980 kb on - strand, within SM_b21185 at 933.980 kb on - strand, within SM_b21185 at 933.987 kb on - strand, within SM_b21185 at 934.095 kb on - strand, within SM_b21185 at 934.170 kb on + strand, within SM_b21185 at 934.327 kb on + strand, within SM_b21185 at 934.327 kb on + strand, within SM_b21185 at 934.328 kb on - strand, within SM_b21185 at 934.588 kb on + strand, within SM_b21185 at 934.589 kb on - strand, within SM_b21185
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 931,620 + SM_b21183 0.56 -0.1 931,652 - SM_b21183 0.58 +0.9 931,652 - SM_b21183 0.58 +0.9 931,674 - SM_b21183 0.59 +0.4 931,705 - SM_b21183 0.61 +0.5 931,706 + -2.3 931,707 - SM_b21183 0.61 -1.9 931,896 + SM_b21183 0.71 +0.8 931,897 - SM_b21183 0.71 +0.7 931,897 - SM_b21183 0.71 +1.0 931,949 + SM_b21183 0.74 -0.6 932,045 + SM_b21183 0.79 +1.3 932,046 - SM_b21183 0.79 +2.0 932,046 - SM_b21183 0.79 -0.0 932,289 - +2.5 932,357 + +0.9 932,842 - SM_b21184 0.25 +1.1 933,030 + SM_b21184 0.41 -1.0 933,031 - SM_b21184 0.41 +0.9 933,051 + SM_b21184 0.43 +0.6 933,051 + SM_b21184 0.43 -0.9 933,051 + SM_b21184 0.43 +1.0 933,052 - SM_b21184 0.43 -1.1 933,099 + SM_b21184 0.47 -2.5 933,099 + SM_b21184 0.47 -0.8 933,099 + SM_b21184 0.47 +0.9 933,100 - SM_b21184 0.47 +0.7 933,100 - SM_b21184 0.47 -2.4 933,100 - SM_b21184 0.47 -0.6 933,100 - SM_b21184 0.47 -0.6 933,101 + SM_b21184 0.47 +0.3 933,101 + SM_b21184 0.47 -1.0 933,314 + SM_b21184 0.65 +0.6 933,314 + SM_b21184 0.65 -3.7 933,314 + SM_b21184 0.65 -0.2 933,524 + SM_b21184 0.83 -0.4 933,699 - -2.3 933,741 + +0.5 933,741 + -1.7 933,741 + -0.5 933,784 + +0.0 933,785 - +2.5 933,799 + +0.3 933,799 + +1.4 933,800 - -0.8 933,800 - -1.3 933,891 - +0.2 933,979 + SM_b21185 0.15 +1.9 933,979 + SM_b21185 0.15 -0.8 933,979 + SM_b21185 0.15 +1.4 933,980 - SM_b21185 0.15 +0.8 933,980 - SM_b21185 0.15 +0.9 933,987 - SM_b21185 0.15 -2.9 934,095 - SM_b21185 0.23 -2.8 934,170 + SM_b21185 0.28 -4.1 934,327 + SM_b21185 0.38 +0.1 934,327 + SM_b21185 0.38 -1.9 934,328 - SM_b21185 0.38 -1.4 934,588 + SM_b21185 0.56 +0.3 934,589 - SM_b21185 0.56 -0.9
Or see this region's nucleotide sequence