Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21177 and SM_b21178 are separated by 166 nucleotides SM_b21178 and SM_b21179 are separated by 102 nucleotides
SM_b21177: SM_b21177 - phosphate uptake ABC transporter ATP-binding protein, at 923,271 to 924,110
_b21177
SM_b21178: SM_b21178 - membrane protein, methyltransferase, at 924,277 to 925,530
_b21178
SM_b21179: SM_b21179 - FAD-dependent glycerol-3-phosphate dehydrogenase, at 925,633 to 926,808
_b21179
Position (kb) 924
925
926 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 923.390 kb on - strand, within SM_b21177 at 923.390 kb on - strand, within SM_b21177 at 923.479 kb on + strand, within SM_b21177 at 923.479 kb on + strand, within SM_b21177 at 923.480 kb on - strand, within SM_b21177 at 923.501 kb on + strand, within SM_b21177 at 923.502 kb on - strand, within SM_b21177 at 923.781 kb on + strand, within SM_b21177 at 923.922 kb on + strand, within SM_b21177 at 923.923 kb on - strand, within SM_b21177 at 923.971 kb on - strand, within SM_b21177 at 924.014 kb on + strand, within SM_b21177 at 924.014 kb on + strand, within SM_b21177 at 924.040 kb on - strand at 924.091 kb on - strand at 924.590 kb on + strand, within SM_b21178 at 924.623 kb on + strand, within SM_b21178 at 924.645 kb on + strand, within SM_b21178 at 924.734 kb on + strand, within SM_b21178 at 924.735 kb on - strand, within SM_b21178 at 924.735 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.792 kb on - strand, within SM_b21178 at 924.860 kb on + strand, within SM_b21178 at 924.860 kb on + strand, within SM_b21178 at 924.860 kb on + strand, within SM_b21178 at 924.860 kb on + strand, within SM_b21178 at 925.260 kb on + strand, within SM_b21178 at 925.339 kb on + strand, within SM_b21178 at 925.339 kb on + strand, within SM_b21178 at 925.339 kb on + strand, within SM_b21178 at 925.340 kb on - strand, within SM_b21178 at 925.340 kb on - strand, within SM_b21178 at 925.468 kb on - strand at 925.573 kb on + strand at 925.574 kb on - strand at 925.574 kb on - strand at 925.577 kb on + strand at 925.577 kb on + strand at 925.578 kb on - strand at 925.578 kb on - strand at 925.578 kb on - strand at 925.578 kb on - strand at 925.578 kb on - strand at 925.908 kb on - strand, within SM_b21179 at 926.062 kb on + strand, within SM_b21179 at 926.062 kb on + strand, within SM_b21179 at 926.367 kb on - strand, within SM_b21179 at 926.516 kb on - strand, within SM_b21179
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 923,390 - SM_b21177 0.14 +0.3 923,390 - SM_b21177 0.14 +0.5 923,479 + SM_b21177 0.25 +1.0 923,479 + SM_b21177 0.25 +1.3 923,480 - SM_b21177 0.25 +1.5 923,501 + SM_b21177 0.27 +0.9 923,502 - SM_b21177 0.28 +0.0 923,781 + SM_b21177 0.61 +0.9 923,922 + SM_b21177 0.78 -3.3 923,923 - SM_b21177 0.78 -0.7 923,971 - SM_b21177 0.83 +0.3 924,014 + SM_b21177 0.88 -0.1 924,014 + SM_b21177 0.88 -0.2 924,040 - -0.1 924,091 - -1.4 924,590 + SM_b21178 0.25 +0.4 924,623 + SM_b21178 0.28 +1.7 924,645 + SM_b21178 0.29 -0.7 924,734 + SM_b21178 0.36 -1.5 924,735 - SM_b21178 0.37 +0.0 924,735 - SM_b21178 0.37 -1.9 924,792 - SM_b21178 0.41 +0.2 924,792 - SM_b21178 0.41 +0.1 924,792 - SM_b21178 0.41 +1.8 924,792 - SM_b21178 0.41 +1.5 924,792 - SM_b21178 0.41 +0.5 924,792 - SM_b21178 0.41 -0.1 924,792 - SM_b21178 0.41 +0.4 924,860 + SM_b21178 0.46 -1.0 924,860 + SM_b21178 0.46 +1.1 924,860 + SM_b21178 0.46 +0.3 924,860 + SM_b21178 0.46 -0.2 925,260 + SM_b21178 0.78 +0.0 925,339 + SM_b21178 0.85 -1.0 925,339 + SM_b21178 0.85 +0.9 925,339 + SM_b21178 0.85 +0.7 925,340 - SM_b21178 0.85 +0.4 925,340 - SM_b21178 0.85 -0.0 925,468 - +0.6 925,573 + +1.8 925,574 - +0.4 925,574 - -2.1 925,577 + -1.1 925,577 + +0.0 925,578 - +0.1 925,578 - +0.4 925,578 - +0.4 925,578 - +0.1 925,578 - -0.7 925,908 - SM_b21179 0.23 +1.5 926,062 + SM_b21179 0.36 +0.9 926,062 + SM_b21179 0.36 +0.1 926,367 - SM_b21179 0.62 -0.4 926,516 - SM_b21179 0.75 -1.1
Or see this region's nucleotide sequence