Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21157 and SM_b21158 are separated by 20 nucleotides SM_b21158 and SM_b21159 are separated by 19 nucleotides SM_b21159 and SM_b21160 are separated by 24 nucleotides
SM_b21157: SM_b21157 - translation initiation inhibitor protein, at 901,228 to 901,617
_b21157
SM_b21158: SM_b21158 - transcriptional regulator, at 901,638 to 902,501
_b21158
SM_b21159: SM_b21159 - short-chain dehydrogenase, at 902,521 to 903,297
_b21159
SM_b21160: SM_b21160 - beta-N-acetylhexosaminidase, at 903,322 to 905,241
_b21160
Position (kb)
902
903
904 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 901.547 kb on + strand, within SM_b21157 at 901.548 kb on - strand, within SM_b21157 at 901.548 kb on - strand, within SM_b21157 at 901.548 kb on - strand, within SM_b21157 at 901.597 kb on + strand at 901.598 kb on - strand at 901.598 kb on - strand at 901.644 kb on - strand at 901.861 kb on - strand, within SM_b21158 at 901.861 kb on - strand, within SM_b21158 at 901.982 kb on - strand, within SM_b21158 at 902.028 kb on + strand, within SM_b21158 at 902.028 kb on + strand, within SM_b21158 at 902.028 kb on + strand, within SM_b21158 at 902.029 kb on - strand, within SM_b21158 at 902.171 kb on + strand, within SM_b21158 at 902.171 kb on + strand, within SM_b21158 at 902.261 kb on + strand, within SM_b21158 at 902.261 kb on + strand, within SM_b21158 at 902.337 kb on + strand, within SM_b21158 at 902.337 kb on + strand, within SM_b21158 at 902.338 kb on - strand, within SM_b21158 at 902.357 kb on + strand, within SM_b21158 at 902.358 kb on - strand, within SM_b21158 at 902.365 kb on - strand, within SM_b21158 at 902.962 kb on + strand, within SM_b21159 at 903.130 kb on + strand, within SM_b21159 at 903.292 kb on + strand at 903.442 kb on + strand at 903.442 kb on + strand at 903.443 kb on - strand at 903.443 kb on - strand at 903.443 kb on - strand at 903.632 kb on - strand, within SM_b21160 at 903.632 kb on - strand, within SM_b21160 at 903.716 kb on + strand, within SM_b21160 at 903.873 kb on - strand, within SM_b21160 at 903.873 kb on - strand, within SM_b21160 at 903.979 kb on + strand, within SM_b21160 at 904.018 kb on + strand, within SM_b21160 at 904.042 kb on + strand, within SM_b21160 at 904.141 kb on + strand, within SM_b21160 at 904.141 kb on + strand, within SM_b21160 at 904.142 kb on - strand, within SM_b21160 at 904.142 kb on - strand, within SM_b21160 at 904.215 kb on + strand, within SM_b21160
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 901,547 + SM_b21157 0.82 -0.7 901,548 - SM_b21157 0.82 -0.2 901,548 - SM_b21157 0.82 +1.2 901,548 - SM_b21157 0.82 -0.7 901,597 + -0.2 901,598 - -0.1 901,598 - -0.9 901,644 - -0.6 901,861 - SM_b21158 0.26 +2.0 901,861 - SM_b21158 0.26 -2.4 901,982 - SM_b21158 0.40 +1.2 902,028 + SM_b21158 0.45 -2.7 902,028 + SM_b21158 0.45 +0.6 902,028 + SM_b21158 0.45 +0.9 902,029 - SM_b21158 0.45 +4.2 902,171 + SM_b21158 0.62 +0.3 902,171 + SM_b21158 0.62 -2.1 902,261 + SM_b21158 0.72 +0.1 902,261 + SM_b21158 0.72 +1.2 902,337 + SM_b21158 0.81 +2.6 902,337 + SM_b21158 0.81 +1.4 902,338 - SM_b21158 0.81 +0.1 902,357 + SM_b21158 0.83 -1.7 902,358 - SM_b21158 0.83 -0.4 902,365 - SM_b21158 0.84 -3.8 902,962 + SM_b21159 0.57 -0.1 903,130 + SM_b21159 0.78 -0.9 903,292 + +0.5 903,442 + +1.2 903,442 + -1.9 903,443 - +0.5 903,443 - -4.0 903,443 - -1.6 903,632 - SM_b21160 0.16 +0.5 903,632 - SM_b21160 0.16 +0.5 903,716 + SM_b21160 0.21 +1.9 903,873 - SM_b21160 0.29 +0.7 903,873 - SM_b21160 0.29 -0.0 903,979 + SM_b21160 0.34 -1.0 904,018 + SM_b21160 0.36 -1.1 904,042 + SM_b21160 0.38 +0.7 904,141 + SM_b21160 0.43 -0.9 904,141 + SM_b21160 0.43 -0.1 904,142 - SM_b21160 0.43 +0.5 904,142 - SM_b21160 0.43 -0.1 904,215 + SM_b21160 0.47 +2.9
Or see this region's nucleotide sequence