Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21156

Experiment: Polymyxin B sulfate 0.00005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21155 and SM_b21156 are separated by 1 nucleotidesSM_b21156 and SM_b21157 are separated by 42 nucleotidesSM_b21157 and SM_b21158 are separated by 20 nucleotides SM_b21155: SM_b21155 - hypothetical protein, at 899,124 to 900,617 _b21155 SM_b21156: SM_b21156 - hypothetical protein, at 900,619 to 901,185 _b21156 SM_b21157: SM_b21157 - translation initiation inhibitor protein, at 901,228 to 901,617 _b21157 SM_b21158: SM_b21158 - transcriptional regulator, at 901,638 to 902,501 _b21158 Position (kb) 900 901 902Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 899.687 kb on + strand, within SM_b21155at 899.697 kb on - strand, within SM_b21155at 899.776 kb on + strand, within SM_b21155at 899.776 kb on + strand, within SM_b21155at 899.776 kb on + strand, within SM_b21155at 899.777 kb on - strand, within SM_b21155at 900.006 kb on + strand, within SM_b21155at 900.214 kb on - strand, within SM_b21155at 900.358 kb on + strand, within SM_b21155at 900.358 kb on + strand, within SM_b21155at 900.359 kb on - strand, within SM_b21155at 900.359 kb on - strand, within SM_b21155at 900.537 kb on + strandat 900.537 kb on + strandat 900.538 kb on - strandat 900.546 kb on - strandat 900.695 kb on + strand, within SM_b21156at 900.699 kb on - strand, within SM_b21156at 900.897 kb on - strand, within SM_b21156at 900.995 kb on - strand, within SM_b21156at 901.054 kb on + strand, within SM_b21156at 901.055 kb on - strand, within SM_b21156at 901.430 kb on - strand, within SM_b21157at 901.504 kb on + strand, within SM_b21157at 901.505 kb on - strand, within SM_b21157at 901.513 kb on + strand, within SM_b21157at 901.513 kb on + strand, within SM_b21157at 901.547 kb on + strand, within SM_b21157at 901.548 kb on - strand, within SM_b21157at 901.548 kb on - strand, within SM_b21157at 901.548 kb on - strand, within SM_b21157at 901.597 kb on + strandat 901.598 kb on - strandat 901.598 kb on - strandat 901.644 kb on - strandat 901.861 kb on - strand, within SM_b21158at 901.861 kb on - strand, within SM_b21158at 901.982 kb on - strand, within SM_b21158at 902.028 kb on + strand, within SM_b21158at 902.028 kb on + strand, within SM_b21158at 902.028 kb on + strand, within SM_b21158at 902.029 kb on - strand, within SM_b21158at 902.171 kb on + strand, within SM_b21158at 902.171 kb on + strand, within SM_b21158

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
remove
899,687 + SM_b21155 0.38 -1.2
899,697 - SM_b21155 0.38 +0.9
899,776 + SM_b21155 0.44 +1.3
899,776 + SM_b21155 0.44 -2.7
899,776 + SM_b21155 0.44 -2.8
899,777 - SM_b21155 0.44 +0.9
900,006 + SM_b21155 0.59 -0.4
900,214 - SM_b21155 0.73 +0.2
900,358 + SM_b21155 0.83 +0.1
900,358 + SM_b21155 0.83 +0.9
900,359 - SM_b21155 0.83 -0.4
900,359 - SM_b21155 0.83 -2.5
900,537 + +0.1
900,537 + -1.9
900,538 - +1.7
900,546 - +0.7
900,695 + SM_b21156 0.13 -1.7
900,699 - SM_b21156 0.14 +0.5
900,897 - SM_b21156 0.49 -0.4
900,995 - SM_b21156 0.66 +0.8
901,054 + SM_b21156 0.77 +1.6
901,055 - SM_b21156 0.77 +0.4
901,430 - SM_b21157 0.52 +2.4
901,504 + SM_b21157 0.71 -1.2
901,505 - SM_b21157 0.71 +0.3
901,513 + SM_b21157 0.73 -2.1
901,513 + SM_b21157 0.73 -0.2
901,547 + SM_b21157 0.82 -0.7
901,548 - SM_b21157 0.82 -0.2
901,548 - SM_b21157 0.82 +1.2
901,548 - SM_b21157 0.82 -0.7
901,597 + -0.2
901,598 - -0.1
901,598 - -0.9
901,644 - -0.6
901,861 - SM_b21158 0.26 +2.0
901,861 - SM_b21158 0.26 -2.4
901,982 - SM_b21158 0.40 +1.2
902,028 + SM_b21158 0.45 -2.7
902,028 + SM_b21158 0.45 +0.6
902,028 + SM_b21158 0.45 +0.9
902,029 - SM_b21158 0.45 +4.2
902,171 + SM_b21158 0.62 +0.3
902,171 + SM_b21158 0.62 -2.1

Or see this region's nucleotide sequence