Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21155

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21153 and SM_b21154 are separated by 150 nucleotidesSM_b21154 and SM_b21155 are separated by 80 nucleotidesSM_b21155 and SM_b21156 are separated by 1 nucleotidesSM_b21156 and SM_b21157 are separated by 42 nucleotides SM_b21153: SM_b21153 - acetyltransferase, at 898,009 to 898,509 _b21153 SM_b21154: SM_b21154 - hypothetical protein, at 898,660 to 899,043 _b21154 SM_b21155: SM_b21155 - hypothetical protein, at 899,124 to 900,617 _b21155 SM_b21156: SM_b21156 - hypothetical protein, at 900,619 to 901,185 _b21156 SM_b21157: SM_b21157 - translation initiation inhibitor protein, at 901,228 to 901,617 _b21157 Position (kb) 899 900 901Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 898.270 kb on + strand, within SM_b21153at 898.271 kb on - strand, within SM_b21153at 898.687 kb on + strandat 898.687 kb on + strandat 898.687 kb on + strandat 898.687 kb on + strandat 898.687 kb on + strandat 898.688 kb on - strandat 898.688 kb on - strandat 898.688 kb on - strandat 898.688 kb on - strandat 898.688 kb on - strandat 898.688 kb on - strandat 899.015 kb on + strandat 899.015 kb on + strandat 899.015 kb on + strandat 899.116 kb on + strandat 899.117 kb on - strandat 899.239 kb on + strandat 899.240 kb on - strandat 899.687 kb on + strand, within SM_b21155at 899.697 kb on - strand, within SM_b21155at 899.776 kb on + strand, within SM_b21155at 899.776 kb on + strand, within SM_b21155at 899.776 kb on + strand, within SM_b21155at 899.777 kb on - strand, within SM_b21155at 900.006 kb on + strand, within SM_b21155at 900.214 kb on - strand, within SM_b21155at 900.358 kb on + strand, within SM_b21155at 900.358 kb on + strand, within SM_b21155at 900.359 kb on - strand, within SM_b21155at 900.359 kb on - strand, within SM_b21155at 900.537 kb on + strandat 900.537 kb on + strandat 900.538 kb on - strandat 900.546 kb on - strandat 900.695 kb on + strand, within SM_b21156at 900.699 kb on - strand, within SM_b21156at 900.897 kb on - strand, within SM_b21156at 900.995 kb on - strand, within SM_b21156at 901.054 kb on + strand, within SM_b21156at 901.055 kb on - strand, within SM_b21156at 901.430 kb on - strand, within SM_b21157at 901.504 kb on + strand, within SM_b21157at 901.505 kb on - strand, within SM_b21157at 901.513 kb on + strand, within SM_b21157at 901.513 kb on + strand, within SM_b21157at 901.547 kb on + strand, within SM_b21157at 901.548 kb on - strand, within SM_b21157at 901.548 kb on - strand, within SM_b21157at 901.548 kb on - strand, within SM_b21157at 901.597 kb on + strandat 901.598 kb on - strandat 901.598 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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898,270 + SM_b21153 0.52 -0.8
898,271 - SM_b21153 0.52 +0.7
898,687 + +0.9
898,687 + -3.7
898,687 + +1.0
898,687 + -0.9
898,687 + +1.4
898,688 - +1.9
898,688 - -0.7
898,688 - +0.5
898,688 - +0.3
898,688 - -1.3
898,688 - -0.9
899,015 + -1.3
899,015 + -2.0
899,015 + +1.5
899,116 + +0.4
899,117 - -0.2
899,239 + +0.2
899,240 - +0.4
899,687 + SM_b21155 0.38 -1.2
899,697 - SM_b21155 0.38 +0.9
899,776 + SM_b21155 0.44 +1.3
899,776 + SM_b21155 0.44 -2.7
899,776 + SM_b21155 0.44 -2.8
899,777 - SM_b21155 0.44 +0.9
900,006 + SM_b21155 0.59 -0.4
900,214 - SM_b21155 0.73 +0.2
900,358 + SM_b21155 0.83 +0.1
900,358 + SM_b21155 0.83 +0.9
900,359 - SM_b21155 0.83 -0.4
900,359 - SM_b21155 0.83 -2.5
900,537 + +0.1
900,537 + -1.9
900,538 - +1.7
900,546 - +0.7
900,695 + SM_b21156 0.13 -1.7
900,699 - SM_b21156 0.14 +0.5
900,897 - SM_b21156 0.49 -0.4
900,995 - SM_b21156 0.66 +0.8
901,054 + SM_b21156 0.77 +1.6
901,055 - SM_b21156 0.77 +0.4
901,430 - SM_b21157 0.52 +2.4
901,504 + SM_b21157 0.71 -1.2
901,505 - SM_b21157 0.71 +0.3
901,513 + SM_b21157 0.73 -2.1
901,513 + SM_b21157 0.73 -0.2
901,547 + SM_b21157 0.82 -0.7
901,548 - SM_b21157 0.82 -0.2
901,548 - SM_b21157 0.82 +1.2
901,548 - SM_b21157 0.82 -0.7
901,597 + -0.2
901,598 - -0.1
901,598 - -0.9

Or see this region's nucleotide sequence