Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21137 and SM_b21138 are separated by 13 nucleotides SM_b21138 and SM_b21139 are separated by 36 nucleotides SM_b21139 and SM_b21140 overlap by 4 nucleotides SM_b21140 and SM_b21216 are separated by 41 nucleotides
SM_b21137: SM_b21137 - amino acid ABC transporter permease, at 775,970 to 776,629
_b21137
SM_b21138: SM_b21138 - amino acid ABC transporter ATP-binding protein, at 776,643 to 777,410
_b21138
SM_b21139: SM_b21139 - translation initiation inhibitors, at 777,447 to 777,830
_b21139
SM_b21140: SM_b21140 - transcriptional regulator, at 777,827 to 778,687
_b21140
SM_b21216: SM_b21216 - ABC transporter for D-Glucosamine, ATPase component <small>(from data)</small>, at 778,729 to 779,811
_b21216
Position (kb) 777
778 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 776.559 kb on - strand, within SM_b21137 at 776.574 kb on - strand at 776.954 kb on + strand, within SM_b21138 at 777.000 kb on + strand, within SM_b21138 at 777.219 kb on - strand, within SM_b21138 at 777.219 kb on - strand, within SM_b21138 at 777.280 kb on - strand, within SM_b21138 at 777.538 kb on - strand, within SM_b21139 at 777.538 kb on - strand, within SM_b21139 at 777.538 kb on - strand, within SM_b21139 at 777.538 kb on - strand, within SM_b21139 at 777.713 kb on - strand, within SM_b21139 at 777.723 kb on + strand, within SM_b21139 at 777.723 kb on + strand, within SM_b21139 at 777.723 kb on + strand, within SM_b21139 at 777.816 kb on + strand at 777.817 kb on - strand at 777.853 kb on + strand at 777.853 kb on + strand at 777.854 kb on - strand at 778.019 kb on + strand, within SM_b21140 at 778.019 kb on + strand, within SM_b21140 at 778.104 kb on - strand, within SM_b21140 at 778.122 kb on - strand, within SM_b21140 at 778.122 kb on - strand, within SM_b21140 at 778.219 kb on + strand, within SM_b21140 at 778.226 kb on + strand, within SM_b21140 at 778.227 kb on - strand, within SM_b21140 at 778.227 kb on - strand, within SM_b21140 at 778.280 kb on - strand, within SM_b21140 at 778.281 kb on + strand, within SM_b21140 at 778.282 kb on - strand, within SM_b21140 at 778.282 kb on - strand, within SM_b21140 at 778.365 kb on + strand, within SM_b21140 at 778.366 kb on - strand, within SM_b21140 at 778.366 kb on - strand, within SM_b21140 at 778.455 kb on - strand, within SM_b21140 at 778.714 kb on - strand at 778.714 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 776,559 - SM_b21137 0.89 -0.2 776,574 - +0.1 776,954 + SM_b21138 0.40 -0.1 777,000 + SM_b21138 0.46 +0.7 777,219 - SM_b21138 0.75 +0.1 777,219 - SM_b21138 0.75 -1.5 777,280 - SM_b21138 0.83 +0.5 777,538 - SM_b21139 0.24 -0.5 777,538 - SM_b21139 0.24 +0.6 777,538 - SM_b21139 0.24 -0.6 777,538 - SM_b21139 0.24 +0.8 777,713 - SM_b21139 0.69 -1.5 777,723 + SM_b21139 0.72 +0.4 777,723 + SM_b21139 0.72 -0.8 777,723 + SM_b21139 0.72 +1.2 777,816 + +1.0 777,817 - +0.5 777,853 + +2.2 777,853 + -0.4 777,854 - -0.4 778,019 + SM_b21140 0.22 -1.0 778,019 + SM_b21140 0.22 -1.4 778,104 - SM_b21140 0.32 -0.5 778,122 - SM_b21140 0.34 -1.9 778,122 - SM_b21140 0.34 -0.8 778,219 + SM_b21140 0.46 +0.2 778,226 + SM_b21140 0.46 -3.2 778,227 - SM_b21140 0.46 -0.5 778,227 - SM_b21140 0.46 +0.8 778,280 - SM_b21140 0.53 -3.8 778,281 + SM_b21140 0.53 -0.3 778,282 - SM_b21140 0.53 -0.9 778,282 - SM_b21140 0.53 -0.2 778,365 + SM_b21140 0.62 +0.8 778,366 - SM_b21140 0.63 +0.4 778,366 - SM_b21140 0.63 -0.7 778,455 - SM_b21140 0.73 +0.6 778,714 - -0.5 778,714 - +1.3
Or see this region's nucleotide sequence