Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21135 and SM_b21136 are separated by 39 nucleotides SM_b21136 and SM_b21137 are separated by 5 nucleotides SM_b21137 and SM_b21138 are separated by 13 nucleotides SM_b21138 and SM_b21139 are separated by 36 nucleotides
SM_b21135: SM_b21135 - amino acid ABC transporter substrate-binding protein, at 774,396 to 775,238
_b21135
SM_b21136: SM_b21136 - amino acid ABC transporter permease, at 775,278 to 775,964
_b21136
SM_b21137: SM_b21137 - amino acid ABC transporter permease, at 775,970 to 776,629
_b21137
SM_b21138: SM_b21138 - amino acid ABC transporter ATP-binding protein, at 776,643 to 777,410
_b21138
SM_b21139: SM_b21139 - translation initiation inhibitors, at 777,447 to 777,830
_b21139
Position (kb) 775
776
777 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 774.983 kb on + strand, within SM_b21135 at 775.009 kb on - strand, within SM_b21135 at 775.009 kb on - strand, within SM_b21135 at 775.033 kb on - strand, within SM_b21135 at 775.034 kb on + strand, within SM_b21135 at 775.034 kb on + strand, within SM_b21135 at 775.048 kb on - strand, within SM_b21135 at 775.068 kb on + strand, within SM_b21135 at 775.068 kb on + strand, within SM_b21135 at 775.069 kb on - strand, within SM_b21135 at 775.069 kb on - strand, within SM_b21135 at 775.069 kb on - strand, within SM_b21135 at 775.161 kb on + strand at 775.161 kb on + strand at 775.162 kb on - strand at 775.230 kb on + strand at 775.308 kb on + strand at 775.308 kb on + strand at 775.308 kb on + strand at 775.308 kb on + strand at 775.308 kb on + strand at 775.308 kb on + strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.480 kb on - strand, within SM_b21136 at 775.531 kb on - strand, within SM_b21136 at 775.600 kb on - strand, within SM_b21136 at 775.611 kb on + strand, within SM_b21136 at 775.612 kb on - strand, within SM_b21136 at 775.612 kb on - strand, within SM_b21136 at 775.612 kb on - strand, within SM_b21136 at 775.689 kb on - strand, within SM_b21136 at 775.703 kb on - strand, within SM_b21136 at 775.760 kb on + strand, within SM_b21136 at 775.785 kb on - strand, within SM_b21136 at 775.894 kb on - strand, within SM_b21136 at 776.195 kb on + strand, within SM_b21137 at 776.195 kb on + strand, within SM_b21137 at 776.196 kb on - strand, within SM_b21137 at 776.196 kb on - strand, within SM_b21137 at 776.196 kb on - strand, within SM_b21137 at 776.198 kb on + strand, within SM_b21137 at 776.198 kb on + strand, within SM_b21137 at 776.199 kb on - strand, within SM_b21137 at 776.199 kb on - strand, within SM_b21137 at 776.199 kb on - strand, within SM_b21137 at 776.219 kb on - strand, within SM_b21137 at 776.375 kb on + strand, within SM_b21137 at 776.375 kb on + strand, within SM_b21137 at 776.375 kb on + strand, within SM_b21137 at 776.375 kb on + strand, within SM_b21137 at 776.375 kb on + strand, within SM_b21137 at 776.376 kb on - strand, within SM_b21137 at 776.376 kb on - strand, within SM_b21137 at 776.559 kb on - strand, within SM_b21137 at 776.574 kb on - strand at 776.954 kb on + strand, within SM_b21138 at 777.000 kb on + strand, within SM_b21138 at 777.219 kb on - strand, within SM_b21138 at 777.219 kb on - strand, within SM_b21138 at 777.280 kb on - strand, within SM_b21138 at 777.538 kb on - strand, within SM_b21139 at 777.538 kb on - strand, within SM_b21139 at 777.538 kb on - strand, within SM_b21139 at 777.538 kb on - strand, within SM_b21139
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 774,983 + SM_b21135 0.70 +0.0 775,009 - SM_b21135 0.73 -3.1 775,009 - SM_b21135 0.73 -1.9 775,033 - SM_b21135 0.76 -0.9 775,034 + SM_b21135 0.76 -1.8 775,034 + SM_b21135 0.76 -2.2 775,048 - SM_b21135 0.77 -1.7 775,068 + SM_b21135 0.80 -0.8 775,068 + SM_b21135 0.80 +0.0 775,069 - SM_b21135 0.80 -2.0 775,069 - SM_b21135 0.80 -0.1 775,069 - SM_b21135 0.80 +1.4 775,161 + +1.0 775,161 + +2.0 775,162 - +2.4 775,230 + -0.2 775,308 + +1.5 775,308 + +0.2 775,308 + -0.3 775,308 + +4.2 775,308 + -0.9 775,308 + +0.3 775,309 - -1.6 775,309 - -1.0 775,309 - +0.8 775,309 - -0.4 775,309 - -0.4 775,309 - -0.9 775,309 - +2.8 775,309 - -1.6 775,480 - SM_b21136 0.29 +3.8 775,531 - SM_b21136 0.37 -0.7 775,600 - SM_b21136 0.47 +0.2 775,611 + SM_b21136 0.48 -0.3 775,612 - SM_b21136 0.49 -0.7 775,612 - SM_b21136 0.49 +0.2 775,612 - SM_b21136 0.49 -0.2 775,689 - SM_b21136 0.60 -1.3 775,703 - SM_b21136 0.62 -4.1 775,760 + SM_b21136 0.70 -1.0 775,785 - SM_b21136 0.74 -0.2 775,894 - SM_b21136 0.90 +0.9 776,195 + SM_b21137 0.34 -0.0 776,195 + SM_b21137 0.34 -2.2 776,196 - SM_b21137 0.34 -0.3 776,196 - SM_b21137 0.34 -2.8 776,196 - SM_b21137 0.34 +1.7 776,198 + SM_b21137 0.35 -0.2 776,198 + SM_b21137 0.35 -0.2 776,199 - SM_b21137 0.35 +2.7 776,199 - SM_b21137 0.35 +0.4 776,199 - SM_b21137 0.35 +0.4 776,219 - SM_b21137 0.38 +0.4 776,375 + SM_b21137 0.61 +0.0 776,375 + SM_b21137 0.61 +0.0 776,375 + SM_b21137 0.61 +0.2 776,375 + SM_b21137 0.61 -1.5 776,375 + SM_b21137 0.61 -0.0 776,376 - SM_b21137 0.62 +0.7 776,376 - SM_b21137 0.62 +2.4 776,559 - SM_b21137 0.89 -0.2 776,574 - +0.1 776,954 + SM_b21138 0.40 -0.1 777,000 + SM_b21138 0.46 +0.7 777,219 - SM_b21138 0.75 +0.1 777,219 - SM_b21138 0.75 -1.5 777,280 - SM_b21138 0.83 +0.5 777,538 - SM_b21139 0.24 -0.5 777,538 - SM_b21139 0.24 +0.6 777,538 - SM_b21139 0.24 -0.6 777,538 - SM_b21139 0.24 +0.8
Or see this region's nucleotide sequence