Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21134 and SM_b21135 are separated by 156 nucleotides SM_b21135 and SM_b21136 are separated by 39 nucleotides SM_b21136 and SM_b21137 are separated by 5 nucleotides
SM_b21134: SM_b21134 - amino acid processing enzyme, low specificity D-threonine aldolase, at 773,181 to 774,239
_b21134
SM_b21135: SM_b21135 - amino acid ABC transporter substrate-binding protein, at 774,396 to 775,238
_b21135
SM_b21136: SM_b21136 - amino acid ABC transporter permease, at 775,278 to 775,964
_b21136
SM_b21137: SM_b21137 - amino acid ABC transporter permease, at 775,970 to 776,629
_b21137
Position (kb) 774
775
776 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 773.419 kb on - strand, within SM_b21134 at 773.559 kb on - strand, within SM_b21134 at 773.560 kb on + strand, within SM_b21134 at 773.560 kb on + strand, within SM_b21134 at 773.561 kb on - strand, within SM_b21134 at 773.561 kb on - strand, within SM_b21134 at 773.561 kb on - strand, within SM_b21134 at 773.566 kb on + strand, within SM_b21134 at 773.566 kb on + strand, within SM_b21134 at 773.567 kb on - strand, within SM_b21134 at 773.567 kb on - strand, within SM_b21134 at 773.567 kb on - strand, within SM_b21134 at 773.570 kb on + strand, within SM_b21134 at 773.570 kb on + strand, within SM_b21134 at 773.571 kb on - strand, within SM_b21134 at 773.571 kb on - strand, within SM_b21134 at 773.618 kb on + strand, within SM_b21134 at 773.639 kb on + strand, within SM_b21134 at 773.639 kb on + strand, within SM_b21134 at 773.639 kb on + strand, within SM_b21134 at 773.640 kb on - strand, within SM_b21134 at 773.640 kb on - strand, within SM_b21134 at 773.640 kb on - strand, within SM_b21134 at 773.640 kb on - strand, within SM_b21134 at 773.642 kb on + strand, within SM_b21134 at 773.732 kb on - strand, within SM_b21134 at 773.732 kb on - strand, within SM_b21134 at 773.732 kb on - strand, within SM_b21134 at 773.989 kb on + strand, within SM_b21134 at 773.989 kb on + strand, within SM_b21134 at 773.989 kb on + strand, within SM_b21134 at 773.989 kb on + strand, within SM_b21134 at 773.990 kb on - strand, within SM_b21134 at 773.990 kb on - strand, within SM_b21134 at 773.990 kb on - strand, within SM_b21134 at 774.160 kb on + strand at 774.161 kb on - strand at 774.280 kb on - strand at 774.300 kb on + strand at 774.301 kb on - strand at 774.762 kb on + strand, within SM_b21135 at 774.763 kb on - strand, within SM_b21135 at 774.766 kb on - strand, within SM_b21135 at 774.807 kb on + strand, within SM_b21135 at 774.807 kb on + strand, within SM_b21135 at 774.817 kb on - strand, within SM_b21135 at 774.873 kb on + strand, within SM_b21135 at 774.873 kb on + strand, within SM_b21135 at 774.924 kb on + strand, within SM_b21135 at 774.924 kb on + strand, within SM_b21135 at 774.945 kb on + strand, within SM_b21135 at 774.983 kb on + strand, within SM_b21135 at 775.009 kb on - strand, within SM_b21135 at 775.009 kb on - strand, within SM_b21135 at 775.033 kb on - strand, within SM_b21135 at 775.034 kb on + strand, within SM_b21135 at 775.034 kb on + strand, within SM_b21135 at 775.048 kb on - strand, within SM_b21135 at 775.068 kb on + strand, within SM_b21135 at 775.068 kb on + strand, within SM_b21135 at 775.069 kb on - strand, within SM_b21135 at 775.069 kb on - strand, within SM_b21135 at 775.069 kb on - strand, within SM_b21135 at 775.161 kb on + strand at 775.161 kb on + strand at 775.162 kb on - strand at 775.230 kb on + strand at 775.308 kb on + strand at 775.308 kb on + strand at 775.308 kb on + strand at 775.308 kb on + strand at 775.308 kb on + strand at 775.308 kb on + strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.309 kb on - strand at 775.480 kb on - strand, within SM_b21136 at 775.531 kb on - strand, within SM_b21136 at 775.600 kb on - strand, within SM_b21136 at 775.611 kb on + strand, within SM_b21136 at 775.612 kb on - strand, within SM_b21136 at 775.612 kb on - strand, within SM_b21136 at 775.612 kb on - strand, within SM_b21136 at 775.689 kb on - strand, within SM_b21136 at 775.703 kb on - strand, within SM_b21136 at 775.760 kb on + strand, within SM_b21136 at 775.785 kb on - strand, within SM_b21136 at 775.894 kb on - strand, within SM_b21136 at 776.195 kb on + strand, within SM_b21137 at 776.195 kb on + strand, within SM_b21137 at 776.196 kb on - strand, within SM_b21137 at 776.196 kb on - strand, within SM_b21137 at 776.196 kb on - strand, within SM_b21137 at 776.198 kb on + strand, within SM_b21137 at 776.198 kb on + strand, within SM_b21137 at 776.199 kb on - strand, within SM_b21137 at 776.199 kb on - strand, within SM_b21137 at 776.199 kb on - strand, within SM_b21137 at 776.219 kb on - strand, within SM_b21137
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 773,419 - SM_b21134 0.22 +1.1 773,559 - SM_b21134 0.36 -0.2 773,560 + SM_b21134 0.36 +1.1 773,560 + SM_b21134 0.36 +1.0 773,561 - SM_b21134 0.36 +1.5 773,561 - SM_b21134 0.36 -0.1 773,561 - SM_b21134 0.36 +1.2 773,566 + SM_b21134 0.36 -1.2 773,566 + SM_b21134 0.36 -1.7 773,567 - SM_b21134 0.36 +1.2 773,567 - SM_b21134 0.36 -0.4 773,567 - SM_b21134 0.36 +1.1 773,570 + SM_b21134 0.37 -0.2 773,570 + SM_b21134 0.37 +1.2 773,571 - SM_b21134 0.37 -1.2 773,571 - SM_b21134 0.37 -1.4 773,618 + SM_b21134 0.41 +2.4 773,639 + SM_b21134 0.43 -0.0 773,639 + SM_b21134 0.43 +1.8 773,639 + SM_b21134 0.43 +0.7 773,640 - SM_b21134 0.43 -0.2 773,640 - SM_b21134 0.43 +2.3 773,640 - SM_b21134 0.43 +0.5 773,640 - SM_b21134 0.43 -0.6 773,642 + SM_b21134 0.44 +0.4 773,732 - SM_b21134 0.52 +0.1 773,732 - SM_b21134 0.52 -0.0 773,732 - SM_b21134 0.52 +1.0 773,989 + SM_b21134 0.76 +0.4 773,989 + SM_b21134 0.76 -3.5 773,989 + SM_b21134 0.76 +0.5 773,989 + SM_b21134 0.76 -0.2 773,990 - SM_b21134 0.76 -1.6 773,990 - SM_b21134 0.76 -0.2 773,990 - SM_b21134 0.76 +1.2 774,160 + -1.3 774,161 - +0.4 774,280 - -2.0 774,300 + -0.0 774,301 - -1.0 774,762 + SM_b21135 0.43 -1.3 774,763 - SM_b21135 0.44 -0.0 774,766 - SM_b21135 0.44 -1.7 774,807 + SM_b21135 0.49 +0.6 774,807 + SM_b21135 0.49 -1.8 774,817 - SM_b21135 0.50 +0.0 774,873 + SM_b21135 0.57 -0.4 774,873 + SM_b21135 0.57 -0.6 774,924 + SM_b21135 0.63 -1.7 774,924 + SM_b21135 0.63 -0.7 774,945 + SM_b21135 0.65 -0.6 774,983 + SM_b21135 0.70 +0.0 775,009 - SM_b21135 0.73 -3.1 775,009 - SM_b21135 0.73 -1.9 775,033 - SM_b21135 0.76 -0.9 775,034 + SM_b21135 0.76 -1.8 775,034 + SM_b21135 0.76 -2.2 775,048 - SM_b21135 0.77 -1.7 775,068 + SM_b21135 0.80 -0.8 775,068 + SM_b21135 0.80 +0.0 775,069 - SM_b21135 0.80 -2.0 775,069 - SM_b21135 0.80 -0.1 775,069 - SM_b21135 0.80 +1.4 775,161 + +1.0 775,161 + +2.0 775,162 - +2.4 775,230 + -0.2 775,308 + +1.5 775,308 + +0.2 775,308 + -0.3 775,308 + +4.2 775,308 + -0.9 775,308 + +0.3 775,309 - -1.6 775,309 - -1.0 775,309 - +0.8 775,309 - -0.4 775,309 - -0.4 775,309 - -0.9 775,309 - +2.8 775,309 - -1.6 775,480 - SM_b21136 0.29 +3.8 775,531 - SM_b21136 0.37 -0.7 775,600 - SM_b21136 0.47 +0.2 775,611 + SM_b21136 0.48 -0.3 775,612 - SM_b21136 0.49 -0.7 775,612 - SM_b21136 0.49 +0.2 775,612 - SM_b21136 0.49 -0.2 775,689 - SM_b21136 0.60 -1.3 775,703 - SM_b21136 0.62 -4.1 775,760 + SM_b21136 0.70 -1.0 775,785 - SM_b21136 0.74 -0.2 775,894 - SM_b21136 0.90 +0.9 776,195 + SM_b21137 0.34 -0.0 776,195 + SM_b21137 0.34 -2.2 776,196 - SM_b21137 0.34 -0.3 776,196 - SM_b21137 0.34 -2.8 776,196 - SM_b21137 0.34 +1.7 776,198 + SM_b21137 0.35 -0.2 776,198 + SM_b21137 0.35 -0.2 776,199 - SM_b21137 0.35 +2.7 776,199 - SM_b21137 0.35 +0.4 776,199 - SM_b21137 0.35 +0.4 776,219 - SM_b21137 0.38 +0.4
Or see this region's nucleotide sequence