Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21122

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21121 and SM_b21122 are separated by 27 nucleotidesSM_b21122 and SM_b21123 are separated by 14 nucleotidesSM_b21123 and SM_b21124 are separated by 16 nucleotides SM_b21121: SM_b21121 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data), at 759,569 to 760,732 _b21121 SM_b21122: SM_b21122 - 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data), at 760,760 to 762,367 _b21122 SM_b21123: SM_b21123 - translation initiation inhibitor, at 762,382 to 762,765 _b21123 SM_b21124: SM_b21124 - 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data), at 762,782 to 764,770 _b21124 Position (kb) 760 761 762 763Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 759.811 kb on - strand, within SM_b21121at 759.811 kb on - strand, within SM_b21121at 759.811 kb on - strand, within SM_b21121at 759.843 kb on - strand, within SM_b21121at 759.911 kb on + strand, within SM_b21121at 759.911 kb on + strand, within SM_b21121at 759.911 kb on + strand, within SM_b21121at 759.912 kb on - strand, within SM_b21121at 760.025 kb on + strand, within SM_b21121at 760.026 kb on - strand, within SM_b21121at 760.088 kb on + strand, within SM_b21121at 760.088 kb on + strand, within SM_b21121at 760.089 kb on - strand, within SM_b21121at 760.288 kb on + strand, within SM_b21121at 760.288 kb on + strand, within SM_b21121at 760.288 kb on + strand, within SM_b21121at 760.288 kb on + strand, within SM_b21121at 760.288 kb on + strand, within SM_b21121at 760.289 kb on - strand, within SM_b21121at 760.289 kb on - strand, within SM_b21121at 760.374 kb on - strand, within SM_b21121at 760.374 kb on - strand, within SM_b21121at 760.374 kb on - strand, within SM_b21121at 760.448 kb on + strandat 760.448 kb on + strand, within SM_b21121at 760.449 kb on - strand, within SM_b21121at 760.449 kb on - strand, within SM_b21121at 760.449 kb on - strand, within SM_b21121at 760.449 kb on - strand, within SM_b21121at 760.449 kb on - strand, within SM_b21121at 760.449 kb on - strand, within SM_b21121at 760.475 kb on + strand, within SM_b21121at 760.475 kb on + strand, within SM_b21121at 760.476 kb on - strand, within SM_b21121at 760.476 kb on - strand, within SM_b21121at 760.476 kb on - strand, within SM_b21121at 760.476 kb on - strand, within SM_b21121at 760.481 kb on + strand, within SM_b21121at 760.540 kb on + strand, within SM_b21121at 760.588 kb on - strand, within SM_b21121at 760.588 kb on - strand, within SM_b21121at 760.611 kb on - strand, within SM_b21121at 760.658 kb on + strandat 760.740 kb on - strandat 760.743 kb on + strandat 760.768 kb on - strandat 760.942 kb on + strand, within SM_b21122at 760.994 kb on + strand, within SM_b21122at 761.003 kb on + strand, within SM_b21122at 761.003 kb on + strand, within SM_b21122at 761.004 kb on - strand, within SM_b21122at 761.004 kb on - strand, within SM_b21122at 761.004 kb on - strand, within SM_b21122at 761.004 kb on - strand, within SM_b21122at 761.108 kb on + strand, within SM_b21122at 761.108 kb on + strand, within SM_b21122at 761.109 kb on - strand, within SM_b21122at 761.112 kb on - strand, within SM_b21122at 761.180 kb on + strand, within SM_b21122at 761.180 kb on + strand, within SM_b21122at 761.180 kb on + strand, within SM_b21122at 761.181 kb on - strand, within SM_b21122at 761.181 kb on - strand, within SM_b21122at 761.262 kb on - strand, within SM_b21122at 761.262 kb on - strand, within SM_b21122at 761.263 kb on + strand, within SM_b21122at 761.339 kb on + strand, within SM_b21122at 761.339 kb on + strand, within SM_b21122at 761.340 kb on - strand, within SM_b21122at 761.340 kb on - strand, within SM_b21122at 761.390 kb on - strand, within SM_b21122at 761.609 kb on + strand, within SM_b21122at 761.660 kb on + strand, within SM_b21122at 761.661 kb on - strand, within SM_b21122at 761.912 kb on + strand, within SM_b21122at 762.023 kb on + strand, within SM_b21122at 762.210 kb on + strandat 762.211 kb on - strandat 762.236 kb on + strandat 762.237 kb on - strandat 762.237 kb on - strandat 762.497 kb on + strand, within SM_b21123at 762.670 kb on + strand, within SM_b21123at 762.670 kb on + strand, within SM_b21123at 762.671 kb on - strand, within SM_b21123at 762.763 kb on + strandat 762.763 kb on + strandat 762.764 kb on - strandat 762.782 kb on - strandat 762.782 kb on - strandat 762.959 kb on + strandat 762.977 kb on - strandat 763.083 kb on + strand, within SM_b21124at 763.083 kb on + strand, within SM_b21124at 763.083 kb on + strand, within SM_b21124at 763.084 kb on - strand, within SM_b21124at 763.084 kb on - strand, within SM_b21124

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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759,811 - SM_b21121 0.21 +0.6
759,811 - SM_b21121 0.21 +1.1
759,811 - SM_b21121 0.21 -0.7
759,843 - SM_b21121 0.24 -0.2
759,911 + SM_b21121 0.29 -1.1
759,911 + SM_b21121 0.29 -0.7
759,911 + SM_b21121 0.29 +0.8
759,912 - SM_b21121 0.29 +0.0
760,025 + SM_b21121 0.39 -0.0
760,026 - SM_b21121 0.39 -1.0
760,088 + SM_b21121 0.45 -3.2
760,088 + SM_b21121 0.45 -2.7
760,089 - SM_b21121 0.45 +0.6
760,288 + SM_b21121 0.62 -2.6
760,288 + SM_b21121 0.62 -1.3
760,288 + SM_b21121 0.62 +0.7
760,288 + SM_b21121 0.62 +1.0
760,288 + SM_b21121 0.62 -0.4
760,289 - SM_b21121 0.62 +0.2
760,289 - SM_b21121 0.62 -0.4
760,374 - SM_b21121 0.69 -1.5
760,374 - SM_b21121 0.69 +1.0
760,374 - SM_b21121 0.69 +0.5
760,448 + -1.5
760,448 + SM_b21121 0.76 +2.7
760,449 - SM_b21121 0.76 -0.3
760,449 - SM_b21121 0.76 +0.2
760,449 - SM_b21121 0.76 +0.1
760,449 - SM_b21121 0.76 +1.2
760,449 - SM_b21121 0.76 -0.5
760,449 - SM_b21121 0.76 +0.0
760,475 + SM_b21121 0.78 -1.6
760,475 + SM_b21121 0.78 -1.5
760,476 - SM_b21121 0.78 +0.6
760,476 - SM_b21121 0.78 -1.1
760,476 - SM_b21121 0.78 -2.3
760,476 - SM_b21121 0.78 +1.1
760,481 + SM_b21121 0.78 +0.3
760,540 + SM_b21121 0.83 -1.8
760,588 - SM_b21121 0.88 +0.5
760,588 - SM_b21121 0.88 -0.7
760,611 - SM_b21121 0.90 -3.2
760,658 + -0.9
760,740 - -2.3
760,743 + -0.5
760,768 - +0.5
760,942 + SM_b21122 0.11 -2.0
760,994 + SM_b21122 0.15 -1.5
761,003 + SM_b21122 0.15 +1.1
761,003 + SM_b21122 0.15 -1.7
761,004 - SM_b21122 0.15 -3.5
761,004 - SM_b21122 0.15 -2.5
761,004 - SM_b21122 0.15 +0.4
761,004 - SM_b21122 0.15 -0.4
761,108 + SM_b21122 0.22 +0.4
761,108 + SM_b21122 0.22 +0.3
761,109 - SM_b21122 0.22 +1.3
761,112 - SM_b21122 0.22 +1.4
761,180 + SM_b21122 0.26 +0.7
761,180 + SM_b21122 0.26 +1.4
761,180 + SM_b21122 0.26 +0.7
761,181 - SM_b21122 0.26 +0.5
761,181 - SM_b21122 0.26 -1.3
761,262 - SM_b21122 0.31 -1.0
761,262 - SM_b21122 0.31 -1.2
761,263 + SM_b21122 0.31 -0.5
761,339 + SM_b21122 0.36 -3.8
761,339 + SM_b21122 0.36 -1.3
761,340 - SM_b21122 0.36 +3.2
761,340 - SM_b21122 0.36 -0.9
761,390 - SM_b21122 0.39 -0.0
761,609 + SM_b21122 0.53 +4.6
761,660 + SM_b21122 0.56 -0.4
761,661 - SM_b21122 0.56 -0.0
761,912 + SM_b21122 0.72 -3.3
762,023 + SM_b21122 0.79 -0.1
762,210 + -0.0
762,211 - +0.2
762,236 + -2.3
762,237 - -1.5
762,237 - -3.0
762,497 + SM_b21123 0.30 +2.5
762,670 + SM_b21123 0.75 -0.2
762,670 + SM_b21123 0.75 -0.9
762,671 - SM_b21123 0.75 -0.5
762,763 + +1.4
762,763 + +2.5
762,764 - +0.1
762,782 - +1.9
762,782 - -1.0
762,959 + +0.7
762,977 - +0.8
763,083 + SM_b21124 0.15 -1.5
763,083 + SM_b21124 0.15 -1.5
763,083 + SM_b21124 0.15 -1.0
763,084 - SM_b21124 0.15 +0.8
763,084 - SM_b21124 0.15 +0.8

Or see this region's nucleotide sequence