Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21063 and SM_b21064 overlap by 4 nucleotides SM_b21064 and SM_b21065 are separated by 15 nucleotides SM_b21065 and SM_b21066 overlap by 4 nucleotides
SM_b21063: SM_b21063 - nucleotide-binding protein, at 697,071 to 698,642
_b21063
SM_b21064: SM_b21064 - hypothetical protein, at 698,639 to 699,172
_b21064
SM_b21065: SM_b21065 - hypothetical protein, at 699,188 to 700,165
_b21065
SM_b21066: SM_b21066 - glycosyltransferase, at 700,162 to 701,115
_b21066
Position (kb) 698
699
700 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 697.719 kb on + strand, within SM_b21063 at 697.720 kb on - strand, within SM_b21063 at 697.722 kb on + strand, within SM_b21063 at 697.722 kb on + strand, within SM_b21063 at 697.755 kb on + strand, within SM_b21063 at 697.755 kb on + strand, within SM_b21063 at 697.756 kb on - strand, within SM_b21063 at 697.758 kb on + strand, within SM_b21063 at 697.851 kb on + strand, within SM_b21063 at 697.873 kb on + strand, within SM_b21063 at 697.918 kb on + strand, within SM_b21063 at 697.918 kb on + strand, within SM_b21063 at 697.919 kb on - strand, within SM_b21063 at 697.919 kb on - strand, within SM_b21063 at 698.156 kb on + strand, within SM_b21063 at 698.157 kb on - strand, within SM_b21063 at 698.340 kb on + strand, within SM_b21063 at 698.358 kb on + strand, within SM_b21063 at 698.359 kb on - strand, within SM_b21063 at 698.359 kb on - strand, within SM_b21063 at 698.411 kb on + strand, within SM_b21063 at 698.412 kb on - strand, within SM_b21063 at 698.412 kb on - strand at 698.425 kb on + strand, within SM_b21063 at 698.425 kb on + strand, within SM_b21063 at 698.714 kb on + strand, within SM_b21064 at 698.761 kb on + strand, within SM_b21064 at 698.761 kb on + strand, within SM_b21064 at 698.765 kb on - strand, within SM_b21064 at 698.817 kb on + strand, within SM_b21064 at 698.840 kb on + strand, within SM_b21064 at 698.840 kb on + strand, within SM_b21064 at 698.841 kb on - strand, within SM_b21064 at 698.858 kb on + strand, within SM_b21064 at 698.874 kb on - strand, within SM_b21064 at 698.874 kb on - strand, within SM_b21064 at 699.280 kb on + strand at 699.281 kb on - strand at 699.306 kb on + strand, within SM_b21065 at 699.307 kb on - strand, within SM_b21065 at 699.307 kb on - strand, within SM_b21065 at 699.307 kb on - strand, within SM_b21065 at 699.351 kb on - strand, within SM_b21065 at 699.372 kb on + strand, within SM_b21065 at 699.373 kb on - strand, within SM_b21065 at 699.415 kb on - strand, within SM_b21065 at 699.586 kb on + strand, within SM_b21065 at 699.636 kb on - strand, within SM_b21065 at 699.636 kb on - strand, within SM_b21065 at 699.657 kb on + strand, within SM_b21065 at 699.671 kb on + strand, within SM_b21065 at 699.856 kb on + strand, within SM_b21065 at 699.867 kb on + strand, within SM_b21065 at 699.939 kb on - strand, within SM_b21065 at 699.939 kb on - strand, within SM_b21065 at 699.973 kb on + strand, within SM_b21065 at 699.973 kb on + strand, within SM_b21065 at 699.973 kb on + strand, within SM_b21065 at 699.973 kb on + strand, within SM_b21065 at 699.973 kb on + strand, within SM_b21065 at 699.974 kb on - strand, within SM_b21065 at 699.974 kb on - strand, within SM_b21065 at 700.165 kb on + strand at 700.166 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 697,719 + SM_b21063 0.41 -0.2 697,720 - SM_b21063 0.41 +0.2 697,722 + SM_b21063 0.41 -0.4 697,722 + SM_b21063 0.41 -0.4 697,755 + SM_b21063 0.44 +0.5 697,755 + SM_b21063 0.44 -1.9 697,756 - SM_b21063 0.44 +1.0 697,758 + SM_b21063 0.44 -1.0 697,851 + SM_b21063 0.50 -0.6 697,873 + SM_b21063 0.51 +1.1 697,918 + SM_b21063 0.54 +0.4 697,918 + SM_b21063 0.54 -0.2 697,919 - SM_b21063 0.54 +1.2 697,919 - SM_b21063 0.54 -1.5 698,156 + SM_b21063 0.69 +0.6 698,157 - SM_b21063 0.69 +0.8 698,340 + SM_b21063 0.81 -0.7 698,358 + SM_b21063 0.82 +0.4 698,359 - SM_b21063 0.82 +0.2 698,359 - SM_b21063 0.82 -1.2 698,411 + SM_b21063 0.85 -0.3 698,412 - SM_b21063 0.85 -3.2 698,412 - +1.8 698,425 + SM_b21063 0.86 +0.6 698,425 + SM_b21063 0.86 -2.6 698,714 + SM_b21064 0.14 -0.5 698,761 + SM_b21064 0.23 -2.3 698,761 + SM_b21064 0.23 -1.1 698,765 - SM_b21064 0.24 +1.2 698,817 + SM_b21064 0.33 -0.9 698,840 + SM_b21064 0.38 +0.8 698,840 + SM_b21064 0.38 -1.1 698,841 - SM_b21064 0.38 +0.5 698,858 + SM_b21064 0.41 -0.5 698,874 - SM_b21064 0.44 -1.7 698,874 - SM_b21064 0.44 -2.0 699,280 + -0.5 699,281 - -1.6 699,306 + SM_b21065 0.12 +0.4 699,307 - SM_b21065 0.12 +0.2 699,307 - SM_b21065 0.12 -0.6 699,307 - SM_b21065 0.12 -0.2 699,351 - SM_b21065 0.17 +0.2 699,372 + SM_b21065 0.19 +0.3 699,373 - SM_b21065 0.19 +0.9 699,415 - SM_b21065 0.23 -1.2 699,586 + SM_b21065 0.41 +0.6 699,636 - SM_b21065 0.46 -2.2 699,636 - SM_b21065 0.46 +0.2 699,657 + SM_b21065 0.48 +0.2 699,671 + SM_b21065 0.49 -0.3 699,856 + SM_b21065 0.68 +0.1 699,867 + SM_b21065 0.69 +4.4 699,939 - SM_b21065 0.77 +0.9 699,939 - SM_b21065 0.77 +0.8 699,973 + SM_b21065 0.80 +0.4 699,973 + SM_b21065 0.80 +0.4 699,973 + SM_b21065 0.80 -1.7 699,973 + SM_b21065 0.80 -2.5 699,973 + SM_b21065 0.80 +0.0 699,974 - SM_b21065 0.80 +2.2 699,974 - SM_b21065 0.80 +1.6 700,165 + -0.3 700,166 - +0.8
Or see this region's nucleotide sequence