Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21056 and SM_b21057 overlap by 35 nucleotides SM_b21057 and SM_b21058 are separated by 52 nucleotides SM_b21058 and SM_b21059 are separated by 23 nucleotides SM_b21059 and SM_b21060 are separated by 4 nucleotides
SM_b21056: SM_b21056 - esterase, at 689,474 to 691,801
_b21056
SM_b21057: SM_b21057 - hypothetical protein, at 691,767 to 692,645
_b21057
SM_b21058: SM_b21058 - glucose-1-phosphate cytidylyltransferase, at 692,698 to 692,919
_b21058
SM_b21059: SM_b21059 - glucose-1-phosphate cytidylyltransferase, at 692,943 to 693,467
_b21059
SM_b21060: SM_b21060 - sugar nucleotide epimerase dehydratase, at 693,472 to 694,521
_b21060
Position (kb) 692
693 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 691.734 kb on - strand at 691.760 kb on + strand at 691.761 kb on - strand at 692.068 kb on + strand, within SM_b21057 at 692.068 kb on + strand, within SM_b21057 at 692.068 kb on + strand, within SM_b21057 at 692.069 kb on - strand, within SM_b21057 at 692.069 kb on - strand, within SM_b21057 at 692.069 kb on - strand, within SM_b21057 at 692.069 kb on - strand, within SM_b21057 at 692.147 kb on + strand, within SM_b21057 at 692.147 kb on + strand, within SM_b21057 at 692.228 kb on + strand, within SM_b21057 at 692.236 kb on + strand, within SM_b21057 at 692.274 kb on + strand, within SM_b21057 at 692.275 kb on - strand, within SM_b21057 at 692.275 kb on - strand, within SM_b21057 at 692.531 kb on + strand, within SM_b21057 at 692.531 kb on + strand, within SM_b21057 at 692.532 kb on - strand, within SM_b21057 at 692.648 kb on + strand at 692.648 kb on + strand at 692.710 kb on - strand at 692.710 kb on - strand at 692.818 kb on + strand, within SM_b21058 at 692.819 kb on - strand, within SM_b21058 at 692.819 kb on - strand, within SM_b21058 at 692.872 kb on + strand, within SM_b21058 at 692.897 kb on - strand at 692.897 kb on - strand at 693.057 kb on - strand, within SM_b21059 at 693.288 kb on + strand, within SM_b21059 at 693.289 kb on - strand, within SM_b21059 at 693.395 kb on + strand, within SM_b21059 at 693.395 kb on + strand, within SM_b21059 at 693.396 kb on - strand, within SM_b21059 at 693.396 kb on - strand, within SM_b21059 at 693.396 kb on - strand, within SM_b21059 at 693.487 kb on - strand at 693.502 kb on + strand at 693.503 kb on - strand at 693.503 kb on - strand at 693.506 kb on + strand at 693.506 kb on + strand at 693.506 kb on + strand at 693.506 kb on + strand at 693.506 kb on + strand at 693.506 kb on + strand at 693.507 kb on - strand at 693.507 kb on - strand at 693.507 kb on - strand at 693.507 kb on - strand at 693.677 kb on + strand, within SM_b21060 at 693.677 kb on + strand, within SM_b21060 at 693.677 kb on + strand, within SM_b21060 at 693.677 kb on + strand, within SM_b21060 at 693.678 kb on - strand, within SM_b21060 at 693.678 kb on - strand, within SM_b21060 at 693.678 kb on - strand, within SM_b21060 at 693.826 kb on + strand, within SM_b21060 at 693.827 kb on - strand, within SM_b21060 at 693.827 kb on - strand, within SM_b21060 at 693.886 kb on + strand, within SM_b21060 at 693.887 kb on - strand, within SM_b21060
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 691,734 - -0.0 691,760 + +0.1 691,761 - -0.3 692,068 + SM_b21057 0.34 +0.8 692,068 + SM_b21057 0.34 +0.9 692,068 + SM_b21057 0.34 -1.4 692,069 - SM_b21057 0.34 +2.1 692,069 - SM_b21057 0.34 +0.7 692,069 - SM_b21057 0.34 -0.1 692,069 - SM_b21057 0.34 -0.8 692,147 + SM_b21057 0.43 +0.3 692,147 + SM_b21057 0.43 +1.6 692,228 + SM_b21057 0.52 +0.2 692,236 + SM_b21057 0.53 -1.4 692,274 + SM_b21057 0.58 +0.3 692,275 - SM_b21057 0.58 -0.5 692,275 - SM_b21057 0.58 -2.3 692,531 + SM_b21057 0.87 -2.3 692,531 + SM_b21057 0.87 -0.5 692,532 - SM_b21057 0.87 +1.0 692,648 + -1.1 692,648 + -1.4 692,710 - +0.7 692,710 - -1.4 692,818 + SM_b21058 0.54 -1.7 692,819 - SM_b21058 0.55 -1.2 692,819 - SM_b21058 0.55 -1.1 692,872 + SM_b21058 0.78 -1.5 692,897 - +0.4 692,897 - -1.0 693,057 - SM_b21059 0.22 +0.2 693,288 + SM_b21059 0.66 +2.9 693,289 - SM_b21059 0.66 -0.2 693,395 + SM_b21059 0.86 -3.0 693,395 + SM_b21059 0.86 +0.4 693,396 - SM_b21059 0.86 +2.8 693,396 - SM_b21059 0.86 +0.9 693,396 - SM_b21059 0.86 -2.0 693,487 - -0.8 693,502 + +0.1 693,503 - +0.5 693,503 - -1.5 693,506 + +1.0 693,506 + -0.9 693,506 + -2.0 693,506 + -1.4 693,506 + +0.9 693,506 + -0.7 693,507 - +0.9 693,507 - +1.5 693,507 - -2.1 693,507 - +0.9 693,677 + SM_b21060 0.20 +0.0 693,677 + SM_b21060 0.20 +0.0 693,677 + SM_b21060 0.20 +4.4 693,677 + SM_b21060 0.20 +0.9 693,678 - SM_b21060 0.20 -0.1 693,678 - SM_b21060 0.20 +0.2 693,678 - SM_b21060 0.20 -0.1 693,826 + SM_b21060 0.34 -2.0 693,827 - SM_b21060 0.34 -0.3 693,827 - SM_b21060 0.34 +2.1 693,886 + SM_b21060 0.39 +2.9 693,887 - SM_b21060 0.40 +3.0
Or see this region's nucleotide sequence