Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21052

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21051 and SM_b21052 are separated by 303 nucleotidesSM_b21052 and SM_b21053 are separated by 19 nucleotides SM_b21051: SM_b21051 - udpglucosegdpmannose dehydrogenase, at 683,928 to 685,277 _b21051 SM_b21052: SM_b21052 - epimerase dehydratase, at 685,581 to 686,546 _b21052 SM_b21053: SM_b21053 - membrane-anchored glycosyltransferase, at 686,566 to 687,816 _b21053 Position (kb) 685 686 687Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 684.588 kb on + strand, within SM_b21051at 684.589 kb on - strand, within SM_b21051at 684.589 kb on - strand, within SM_b21051at 684.600 kb on + strand, within SM_b21051at 684.600 kb on + strand, within SM_b21051at 684.664 kb on + strand, within SM_b21051at 684.664 kb on + strand, within SM_b21051at 684.665 kb on - strand, within SM_b21051at 684.665 kb on - strand, within SM_b21051at 684.773 kb on - strand, within SM_b21051at 684.867 kb on + strand, within SM_b21051at 684.867 kb on + strand, within SM_b21051at 684.868 kb on - strand, within SM_b21051at 685.077 kb on + strand, within SM_b21051at 685.077 kb on + strand, within SM_b21051at 685.077 kb on + strand, within SM_b21051at 685.077 kb on + strand, within SM_b21051at 685.078 kb on - strand, within SM_b21051at 685.166 kb on + strandat 685.167 kb on - strandat 685.187 kb on - strandat 685.200 kb on - strandat 685.277 kb on + strandat 685.278 kb on - strandat 685.278 kb on - strandat 685.427 kb on - strandat 685.572 kb on - strandat 685.709 kb on + strand, within SM_b21052at 685.710 kb on - strand, within SM_b21052at 685.745 kb on - strand, within SM_b21052at 685.788 kb on + strand, within SM_b21052at 685.789 kb on - strand, within SM_b21052at 685.878 kb on - strand, within SM_b21052at 685.935 kb on + strand, within SM_b21052at 686.022 kb on + strand, within SM_b21052at 686.023 kb on - strand, within SM_b21052at 686.053 kb on - strand, within SM_b21052at 686.056 kb on + strand, within SM_b21052at 686.056 kb on + strand, within SM_b21052at 686.057 kb on - strand, within SM_b21052at 686.057 kb on - strand, within SM_b21052at 686.057 kb on - strand, within SM_b21052at 686.064 kb on + strand, within SM_b21052at 686.064 kb on + strand, within SM_b21052at 686.065 kb on - strand, within SM_b21052at 686.065 kb on - strand, within SM_b21052at 686.115 kb on + strandat 686.115 kb on + strand, within SM_b21052at 686.115 kb on + strand, within SM_b21052at 686.116 kb on - strand, within SM_b21052at 686.116 kb on - strand, within SM_b21052at 686.116 kb on - strand, within SM_b21052at 686.118 kb on - strand, within SM_b21052at 686.227 kb on - strand, within SM_b21052at 686.393 kb on + strand, within SM_b21052at 686.394 kb on - strand, within SM_b21052at 686.394 kb on - strand, within SM_b21052at 686.482 kb on + strandat 686.483 kb on - strandat 686.483 kb on - strandat 686.483 kb on - strandat 686.686 kb on + strandat 686.687 kb on - strandat 686.698 kb on + strand, within SM_b21053at 686.848 kb on + strand, within SM_b21053at 686.849 kb on - strand, within SM_b21053at 686.850 kb on + strand, within SM_b21053at 686.850 kb on + strand, within SM_b21053at 686.850 kb on + strand, within SM_b21053at 686.851 kb on - strand, within SM_b21053at 686.851 kb on - strand, within SM_b21053at 686.851 kb on - strand, within SM_b21053at 686.851 kb on - strand, within SM_b21053at 686.870 kb on - strand, within SM_b21053at 686.912 kb on - strand, within SM_b21053at 686.912 kb on - strand, within SM_b21053at 686.934 kb on - strand, within SM_b21053at 686.956 kb on - strand, within SM_b21053at 687.062 kb on + strand, within SM_b21053at 687.062 kb on + strand, within SM_b21053at 687.062 kb on + strand, within SM_b21053at 687.191 kb on + strand, within SM_b21053at 687.212 kb on + strand, within SM_b21053at 687.242 kb on + strand, within SM_b21053at 687.242 kb on + strand, within SM_b21053at 687.304 kb on + strand, within SM_b21053at 687.377 kb on - strand, within SM_b21053at 687.401 kb on - strand, within SM_b21053at 687.496 kb on + strand, within SM_b21053at 687.497 kb on - strand, within SM_b21053at 687.497 kb on - strand, within SM_b21053at 687.514 kb on - strand, within SM_b21053

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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684,588 + SM_b21051 0.49 -0.2
684,589 - SM_b21051 0.49 -3.6
684,589 - SM_b21051 0.49 -1.2
684,600 + SM_b21051 0.50 +2.0
684,600 + SM_b21051 0.50 -0.8
684,664 + SM_b21051 0.55 +1.0
684,664 + SM_b21051 0.55 -2.3
684,665 - SM_b21051 0.55 -1.2
684,665 - SM_b21051 0.55 -1.2
684,773 - SM_b21051 0.63 -2.7
684,867 + SM_b21051 0.70 -0.1
684,867 + SM_b21051 0.70 -0.7
684,868 - SM_b21051 0.70 +2.6
685,077 + SM_b21051 0.85 +4.3
685,077 + SM_b21051 0.85 +4.6
685,077 + SM_b21051 0.85 -2.1
685,077 + SM_b21051 0.85 -0.2
685,078 - SM_b21051 0.85 -2.1
685,166 + +1.9
685,167 - +1.4
685,187 - -0.9
685,200 - -0.1
685,277 + +2.0
685,278 - +0.1
685,278 - +1.0
685,427 - +3.7
685,572 - -0.2
685,709 + SM_b21052 0.13 -3.0
685,710 - SM_b21052 0.13 -2.0
685,745 - SM_b21052 0.17 -0.7
685,788 + SM_b21052 0.21 -1.4
685,789 - SM_b21052 0.22 +0.2
685,878 - SM_b21052 0.31 -0.3
685,935 + SM_b21052 0.37 -0.4
686,022 + SM_b21052 0.46 -1.7
686,023 - SM_b21052 0.46 +1.1
686,053 - SM_b21052 0.49 -0.1
686,056 + SM_b21052 0.49 -1.1
686,056 + SM_b21052 0.49 -0.1
686,057 - SM_b21052 0.49 -3.8
686,057 - SM_b21052 0.49 -0.3
686,057 - SM_b21052 0.49 -0.3
686,064 + SM_b21052 0.50 +0.1
686,064 + SM_b21052 0.50 +0.4
686,065 - SM_b21052 0.50 -1.1
686,065 - SM_b21052 0.50 -2.8
686,115 + -1.1
686,115 + SM_b21052 0.55 -1.7
686,115 + SM_b21052 0.55 +1.3
686,116 - SM_b21052 0.55 +0.6
686,116 - SM_b21052 0.55 +0.9
686,116 - SM_b21052 0.55 +0.9
686,118 - SM_b21052 0.56 -0.0
686,227 - SM_b21052 0.67 -0.7
686,393 + SM_b21052 0.84 +3.8
686,394 - SM_b21052 0.84 -0.6
686,394 - SM_b21052 0.84 +0.9
686,482 + -1.9
686,483 - -0.4
686,483 - +0.4
686,483 - -1.2
686,686 + +0.1
686,687 - -2.8
686,698 + SM_b21053 0.11 -0.5
686,848 + SM_b21053 0.23 -1.1
686,849 - SM_b21053 0.23 +0.5
686,850 + SM_b21053 0.23 +0.2
686,850 + SM_b21053 0.23 -1.5
686,850 + SM_b21053 0.23 +0.9
686,851 - SM_b21053 0.23 -0.8
686,851 - SM_b21053 0.23 -0.0
686,851 - SM_b21053 0.23 -1.0
686,851 - SM_b21053 0.23 +1.9
686,870 - SM_b21053 0.24 +1.1
686,912 - SM_b21053 0.28 -0.1
686,912 - SM_b21053 0.28 -1.6
686,934 - SM_b21053 0.29 +0.9
686,956 - SM_b21053 0.31 +4.4
687,062 + SM_b21053 0.40 -1.9
687,062 + SM_b21053 0.40 -0.9
687,062 + SM_b21053 0.40 -0.3
687,191 + SM_b21053 0.50 -0.6
687,212 + SM_b21053 0.52 +1.0
687,242 + SM_b21053 0.54 +1.4
687,242 + SM_b21053 0.54 +0.7
687,304 + SM_b21053 0.59 +2.6
687,377 - SM_b21053 0.65 +0.3
687,401 - SM_b21053 0.67 +0.1
687,496 + SM_b21053 0.74 -0.6
687,497 - SM_b21053 0.74 +0.2
687,497 - SM_b21053 0.74 +1.9
687,514 - SM_b21053 0.76 -1.1

Or see this region's nucleotide sequence