Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21047 and SM_b21048 are separated by 126 nucleotides
SM_b21047: SM_b21047 - hypothetical protein, at 679,969 to 680,235
_b21047
SM_b21048: SM_b21048 - hypothetical protein, at 680,362 to 681,807
_b21048
Position (kb) 679
680
681 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 679.139 kb on + strand at 679.178 kb on + strand at 679.179 kb on - strand at 679.179 kb on - strand at 679.276 kb on - strand at 679.309 kb on - strand at 679.344 kb on + strand at 679.450 kb on + strand at 679.450 kb on + strand at 679.451 kb on - strand at 679.451 kb on - strand at 679.452 kb on + strand at 679.453 kb on - strand at 679.553 kb on - strand at 679.662 kb on - strand at 679.666 kb on + strand at 679.785 kb on + strand at 679.804 kb on - strand at 679.807 kb on + strand at 679.808 kb on - strand at 679.808 kb on - strand at 679.808 kb on - strand at 679.808 kb on - strand at 679.808 kb on - strand at 679.862 kb on + strand at 679.862 kb on + strand at 679.863 kb on - strand at 679.863 kb on - strand at 679.893 kb on - strand at 679.912 kb on - strand at 679.919 kb on - strand at 679.948 kb on + strand at 679.971 kb on - strand at 679.981 kb on - strand at 679.981 kb on - strand at 680.061 kb on + strand, within SM_b21047 at 680.101 kb on - strand, within SM_b21047 at 680.142 kb on + strand, within SM_b21047 at 680.143 kb on - strand, within SM_b21047 at 680.143 kb on - strand, within SM_b21047 at 680.360 kb on + strand at 680.360 kb on + strand at 680.363 kb on + strand at 680.363 kb on + strand at 680.364 kb on - strand at 680.364 kb on - strand at 680.410 kb on + strand at 680.410 kb on + strand at 680.411 kb on - strand at 680.411 kb on - strand at 680.411 kb on - strand at 680.411 kb on - strand at 680.602 kb on + strand, within SM_b21048 at 680.623 kb on + strand, within SM_b21048 at 680.624 kb on - strand, within SM_b21048 at 680.626 kb on - strand, within SM_b21048 at 680.650 kb on - strand, within SM_b21048 at 680.763 kb on + strand, within SM_b21048 at 680.763 kb on + strand, within SM_b21048 at 680.763 kb on + strand, within SM_b21048 at 680.766 kb on + strand, within SM_b21048 at 680.766 kb on + strand, within SM_b21048 at 680.775 kb on - strand, within SM_b21048 at 680.864 kb on + strand, within SM_b21048 at 680.864 kb on + strand, within SM_b21048 at 680.865 kb on - strand, within SM_b21048 at 681.005 kb on + strand, within SM_b21048 at 681.093 kb on - strand, within SM_b21048 at 681.093 kb on - strand, within SM_b21048 at 681.098 kb on + strand, within SM_b21048 at 681.206 kb on + strand, within SM_b21048 at 681.207 kb on - strand, within SM_b21048
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 679,139 + -0.0 679,178 + -0.9 679,179 - +0.2 679,179 - -2.6 679,276 - +0.9 679,309 - -0.4 679,344 + +2.0 679,450 + +0.4 679,450 + +0.9 679,451 - +0.4 679,451 - -2.8 679,452 + +0.9 679,453 - +0.4 679,553 - +0.1 679,662 - +1.1 679,666 + +0.6 679,785 + +0.5 679,804 - -2.0 679,807 + +3.4 679,808 - -0.6 679,808 - +0.6 679,808 - +2.2 679,808 - +2.3 679,808 - -0.1 679,862 + +0.8 679,862 + -0.1 679,863 - +2.0 679,863 - +0.5 679,893 - -2.8 679,912 - +3.5 679,919 - -1.1 679,948 + -0.3 679,971 - +0.9 679,981 - -0.2 679,981 - -0.7 680,061 + SM_b21047 0.34 -1.5 680,101 - SM_b21047 0.49 -1.5 680,142 + SM_b21047 0.65 +0.1 680,143 - SM_b21047 0.65 -0.1 680,143 - SM_b21047 0.65 -0.7 680,360 + -0.7 680,360 + -2.6 680,363 + -0.7 680,363 + +0.9 680,364 - -1.5 680,364 - +0.4 680,410 + +0.7 680,410 + -0.5 680,411 - +1.3 680,411 - -0.9 680,411 - -2.5 680,411 - -2.5 680,602 + SM_b21048 0.17 +0.2 680,623 + SM_b21048 0.18 +0.6 680,624 - SM_b21048 0.18 +0.9 680,626 - SM_b21048 0.18 -0.1 680,650 - SM_b21048 0.20 +3.3 680,763 + SM_b21048 0.28 +1.2 680,763 + SM_b21048 0.28 -1.1 680,763 + SM_b21048 0.28 -0.4 680,766 + SM_b21048 0.28 +0.0 680,766 + SM_b21048 0.28 +1.4 680,775 - SM_b21048 0.29 +2.3 680,864 + SM_b21048 0.35 +0.4 680,864 + SM_b21048 0.35 +0.5 680,865 - SM_b21048 0.35 -0.7 681,005 + SM_b21048 0.44 -1.1 681,093 - SM_b21048 0.51 +1.1 681,093 - SM_b21048 0.51 +1.8 681,098 + SM_b21048 0.51 -1.5 681,206 + SM_b21048 0.58 -3.5 681,207 - SM_b21048 0.58 +0.7
Or see this region's nucleotide sequence