Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20973 and SM_b20974 are separated by 13 nucleotides SM_b20974 and SM_b20975 are separated by 25 nucleotides
SM_b20973: SM_b20973 - hypothetical protein, at 1,203,418 to 1,206,444
_b20973
SM_b20974: SM_b20974 - oxidoreductase, at 1,206,458 to 1,207,126
_b20974
SM_b20975: SM_b20975 - amino acid uptake ABC transporter permease, at 1,207,152 to 1,208,801
_b20975
Position (kb)
1206
1207
1208 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1205.538 kb on - strand, within SM_b20973 at 1205.538 kb on - strand, within SM_b20973 at 1205.538 kb on - strand, within SM_b20973 at 1205.594 kb on + strand, within SM_b20973 at 1205.661 kb on - strand, within SM_b20973 at 1205.764 kb on - strand, within SM_b20973 at 1205.817 kb on + strand, within SM_b20973 at 1205.818 kb on - strand, within SM_b20973 at 1205.820 kb on - strand, within SM_b20973 at 1205.835 kb on + strand, within SM_b20973 at 1205.836 kb on - strand, within SM_b20973 at 1205.974 kb on + strand, within SM_b20973 at 1205.975 kb on - strand, within SM_b20973 at 1205.975 kb on - strand, within SM_b20973 at 1205.976 kb on + strand, within SM_b20973 at 1205.977 kb on - strand at 1205.988 kb on - strand, within SM_b20973 at 1206.377 kb on + strand at 1206.525 kb on - strand at 1206.525 kb on - strand, within SM_b20974 at 1206.525 kb on - strand, within SM_b20974 at 1206.587 kb on - strand, within SM_b20974 at 1206.696 kb on + strand, within SM_b20974 at 1206.696 kb on + strand, within SM_b20974 at 1206.697 kb on - strand, within SM_b20974 at 1206.702 kb on + strand, within SM_b20974 at 1206.702 kb on + strand, within SM_b20974 at 1206.702 kb on + strand, within SM_b20974 at 1206.702 kb on + strand, within SM_b20974 at 1206.703 kb on - strand, within SM_b20974 at 1206.703 kb on - strand, within SM_b20974 at 1206.703 kb on - strand, within SM_b20974 at 1206.992 kb on + strand, within SM_b20974 at 1207.074 kb on + strand at 1207.074 kb on + strand at 1207.075 kb on - strand at 1207.075 kb on - strand at 1207.075 kb on - strand at 1207.075 kb on - strand at 1207.075 kb on - strand at 1207.075 kb on - strand at 1207.171 kb on + strand at 1207.172 kb on - strand at 1207.182 kb on + strand at 1207.182 kb on + strand at 1207.183 kb on - strand at 1207.183 kb on - strand at 1207.183 kb on - strand at 1207.225 kb on + strand at 1207.225 kb on + strand at 1207.225 kb on + strand at 1207.244 kb on + strand at 1207.244 kb on + strand at 1207.244 kb on + strand at 1207.245 kb on - strand at 1207.247 kb on - strand at 1207.508 kb on - strand, within SM_b20975 at 1207.508 kb on - strand, within SM_b20975 at 1207.508 kb on - strand, within SM_b20975 at 1207.516 kb on + strand, within SM_b20975 at 1207.517 kb on - strand, within SM_b20975 at 1207.615 kb on + strand, within SM_b20975 at 1207.616 kb on - strand, within SM_b20975 at 1207.616 kb on - strand, within SM_b20975 at 1207.620 kb on + strand, within SM_b20975 at 1207.620 kb on + strand, within SM_b20975 at 1207.620 kb on + strand, within SM_b20975 at 1207.621 kb on - strand, within SM_b20975 at 1207.621 kb on - strand, within SM_b20975 at 1207.621 kb on - strand, within SM_b20975 at 1207.703 kb on - strand, within SM_b20975 at 1207.703 kb on - strand, within SM_b20975 at 1207.957 kb on - strand, within SM_b20975 at 1207.957 kb on - strand, within SM_b20975 at 1207.957 kb on - strand, within SM_b20975 at 1208.020 kb on + strand, within SM_b20975 at 1208.021 kb on - strand, within SM_b20975 at 1208.021 kb on - strand, within SM_b20975 at 1208.111 kb on - strand, within SM_b20975 at 1208.111 kb on - strand, within SM_b20975
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 1,205,538 - SM_b20973 0.70 +0.1 1,205,538 - SM_b20973 0.70 +0.2 1,205,538 - SM_b20973 0.70 -0.7 1,205,594 + SM_b20973 0.72 +1.7 1,205,661 - SM_b20973 0.74 -1.4 1,205,764 - SM_b20973 0.78 -0.5 1,205,817 + SM_b20973 0.79 -0.1 1,205,818 - SM_b20973 0.79 +3.9 1,205,820 - SM_b20973 0.79 -0.1 1,205,835 + SM_b20973 0.80 -0.4 1,205,836 - SM_b20973 0.80 +0.6 1,205,974 + SM_b20973 0.84 +0.6 1,205,975 - SM_b20973 0.84 +0.1 1,205,975 - SM_b20973 0.84 +1.4 1,205,976 + SM_b20973 0.85 -0.2 1,205,977 - +0.9 1,205,988 - SM_b20973 0.85 +0.1 1,206,377 + +0.8 1,206,525 - +1.9 1,206,525 - SM_b20974 0.10 -2.5 1,206,525 - SM_b20974 0.10 -0.1 1,206,587 - SM_b20974 0.19 -0.3 1,206,696 + SM_b20974 0.36 +0.6 1,206,696 + SM_b20974 0.36 -3.4 1,206,697 - SM_b20974 0.36 -1.4 1,206,702 + SM_b20974 0.36 -2.6 1,206,702 + SM_b20974 0.36 +1.5 1,206,702 + SM_b20974 0.36 +0.0 1,206,702 + SM_b20974 0.36 -0.4 1,206,703 - SM_b20974 0.37 +2.1 1,206,703 - SM_b20974 0.37 +0.1 1,206,703 - SM_b20974 0.37 -1.9 1,206,992 + SM_b20974 0.80 -0.1 1,207,074 + -1.4 1,207,074 + +1.2 1,207,075 - +0.6 1,207,075 - -0.9 1,207,075 - -1.9 1,207,075 - -2.8 1,207,075 - +1.1 1,207,075 - -0.1 1,207,171 + +2.9 1,207,172 - +1.2 1,207,182 + -0.1 1,207,182 + +0.6 1,207,183 - +0.3 1,207,183 - +0.5 1,207,183 - +0.8 1,207,225 + -1.2 1,207,225 + +1.6 1,207,225 + -1.4 1,207,244 + -0.8 1,207,244 + -0.3 1,207,244 + -0.9 1,207,245 - +0.3 1,207,247 - +1.5 1,207,508 - SM_b20975 0.22 +1.8 1,207,508 - SM_b20975 0.22 +0.8 1,207,508 - SM_b20975 0.22 -3.3 1,207,516 + SM_b20975 0.22 -0.0 1,207,517 - SM_b20975 0.22 +0.5 1,207,615 + SM_b20975 0.28 +0.1 1,207,616 - SM_b20975 0.28 -0.3 1,207,616 - SM_b20975 0.28 -0.1 1,207,620 + SM_b20975 0.28 +0.5 1,207,620 + SM_b20975 0.28 -0.5 1,207,620 + SM_b20975 0.28 +1.5 1,207,621 - SM_b20975 0.28 -2.1 1,207,621 - SM_b20975 0.28 -1.4 1,207,621 - SM_b20975 0.28 -2.1 1,207,703 - SM_b20975 0.33 +0.6 1,207,703 - SM_b20975 0.33 +0.0 1,207,957 - SM_b20975 0.49 -0.1 1,207,957 - SM_b20975 0.49 -0.4 1,207,957 - SM_b20975 0.49 -1.2 1,208,020 + SM_b20975 0.53 +0.1 1,208,021 - SM_b20975 0.53 -1.4 1,208,021 - SM_b20975 0.53 -1.8 1,208,111 - SM_b20975 0.58 -2.1 1,208,111 - SM_b20975 0.58 -3.1
Or see this region's nucleotide sequence