Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20961 and SM_b20962 are separated by 358 nucleotides SM_b20962 and SM_b20963 are separated by 34 nucleotides SM_b20963 and SM_b20964 are separated by 104 nucleotides
SM_b20961: SM_b20961 - protein tyrosine kinase MPA1 family protein, at 1,188,398 to 1,190,758
_b20961
SM_b20962: SM_b20962 - phoshomethylpyrimidine kinase, at 1,191,117 to 1,191,917
_b20962
SM_b20963: SM_b20963 - transcriptional regulator, at 1,191,952 to 1,192,257
_b20963
SM_b20964: SM_b20964 - Ahp/CTSA family anti-oxidant protein, at 1,192,362 to 1,193,021
_b20964
Position (kb)
1191
1192 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1190.904 kb on + strand at 1191.168 kb on + strand at 1191.168 kb on + strand at 1191.208 kb on + strand, within SM_b20962 at 1191.209 kb on - strand, within SM_b20962 at 1191.209 kb on - strand, within SM_b20962 at 1191.209 kb on - strand, within SM_b20962 at 1191.962 kb on + strand at 1191.962 kb on + strand at 1191.963 kb on - strand at 1192.150 kb on - strand, within SM_b20963 at 1192.153 kb on + strand, within SM_b20963 at 1192.154 kb on - strand, within SM_b20963 at 1192.163 kb on + strand, within SM_b20963 at 1192.201 kb on - strand, within SM_b20963 at 1192.201 kb on - strand, within SM_b20963 at 1192.201 kb on - strand, within SM_b20963 at 1192.232 kb on + strand at 1192.233 kb on - strand at 1192.254 kb on - strand at 1192.254 kb on - strand at 1192.254 kb on - strand at 1192.561 kb on + strand, within SM_b20964 at 1192.562 kb on - strand, within SM_b20964 at 1192.562 kb on - strand, within SM_b20964 at 1192.761 kb on + strand, within SM_b20964 at 1192.762 kb on - strand, within SM_b20964 at 1192.762 kb on - strand, within SM_b20964 at 1192.837 kb on + strand, within SM_b20964
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 1,190,904 + +0.3 1,191,168 + +0.4 1,191,168 + -0.1 1,191,208 + SM_b20962 0.11 -2.1 1,191,209 - SM_b20962 0.11 -0.2 1,191,209 - SM_b20962 0.11 -2.6 1,191,209 - SM_b20962 0.11 -1.4 1,191,962 + -0.5 1,191,962 + -0.1 1,191,963 - +0.9 1,192,150 - SM_b20963 0.65 -0.4 1,192,153 + SM_b20963 0.66 +1.2 1,192,154 - SM_b20963 0.66 +0.5 1,192,163 + SM_b20963 0.69 -1.9 1,192,201 - SM_b20963 0.81 -0.1 1,192,201 - SM_b20963 0.81 +0.1 1,192,201 - SM_b20963 0.81 -3.4 1,192,232 + +0.3 1,192,233 - -0.5 1,192,254 - -2.1 1,192,254 - +1.6 1,192,254 - -0.7 1,192,561 + SM_b20964 0.30 +1.2 1,192,562 - SM_b20964 0.30 -0.9 1,192,562 - SM_b20964 0.30 -0.8 1,192,761 + SM_b20964 0.60 -3.6 1,192,762 - SM_b20964 0.61 +0.9 1,192,762 - SM_b20964 0.61 -1.5 1,192,837 + SM_b20964 0.72 +2.9
Or see this region's nucleotide sequence