Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20826

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20825 and SM_b20826 are separated by 67 nucleotidesSM_b20826 and SM_b20827 are separated by 223 nucleotides SM_b20825: SM_b20825 - acetyltransferase, cysElacA/lpxA/nodL family protein, at 616,023 to 616,793 _b20825 SM_b20826: SM_b20826 - hypothetical protein, at 616,861 to 617,394 _b20826 SM_b20827: SM_b20827 - transposase, at 617,618 to 618,205 _b20827 Position (kb) 616 617 618Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 615.872 kb on + strandat 615.872 kb on + strandat 615.873 kb on - strandat 615.893 kb on + strandat 615.894 kb on - strandat 615.956 kb on + strandat 615.971 kb on - strandat 616.036 kb on + strandat 616.037 kb on - strandat 616.037 kb on - strandat 616.037 kb on - strandat 616.037 kb on - strandat 616.037 kb on - strandat 616.058 kb on + strandat 616.058 kb on + strandat 616.059 kb on - strandat 616.059 kb on - strandat 616.059 kb on - strandat 616.059 kb on - strandat 616.070 kb on + strandat 616.070 kb on + strandat 616.071 kb on - strandat 616.071 kb on - strandat 616.071 kb on - strandat 616.088 kb on + strandat 616.089 kb on - strandat 616.139 kb on + strand, within SM_b20825at 616.140 kb on - strandat 616.191 kb on + strand, within SM_b20825at 616.192 kb on - strand, within SM_b20825at 616.290 kb on - strand, within SM_b20825at 616.296 kb on - strand, within SM_b20825at 616.296 kb on - strand, within SM_b20825at 616.478 kb on + strand, within SM_b20825at 616.479 kb on - strand, within SM_b20825at 616.479 kb on - strand, within SM_b20825at 616.535 kb on + strand, within SM_b20825at 616.536 kb on - strand, within SM_b20825at 616.554 kb on + strand, within SM_b20825at 616.554 kb on + strand, within SM_b20825at 616.555 kb on - strand, within SM_b20825at 616.555 kb on - strand, within SM_b20825at 616.697 kb on + strand, within SM_b20825at 616.698 kb on - strand, within SM_b20825at 616.740 kb on + strandat 616.763 kb on + strandat 616.858 kb on + strandat 616.859 kb on - strandat 616.859 kb on - strandat 616.990 kb on + strand, within SM_b20826at 616.990 kb on + strand, within SM_b20826at 616.990 kb on + strand, within SM_b20826at 616.990 kb on + strand, within SM_b20826at 617.035 kb on + strand, within SM_b20826at 617.035 kb on + strand, within SM_b20826at 617.054 kb on + strand, within SM_b20826at 617.054 kb on + strand, within SM_b20826at 617.115 kb on + strand, within SM_b20826at 617.116 kb on - strand, within SM_b20826at 617.302 kb on + strand, within SM_b20826at 617.302 kb on + strand, within SM_b20826at 617.303 kb on - strand, within SM_b20826at 617.323 kb on + strand, within SM_b20826at 617.323 kb on + strand, within SM_b20826at 617.324 kb on - strand, within SM_b20826at 617.328 kb on - strand, within SM_b20826at 617.328 kb on - strand, within SM_b20826at 617.403 kb on + strandat 617.403 kb on + strandat 617.454 kb on + strandat 617.454 kb on + strandat 617.454 kb on + strandat 617.454 kb on + strandat 617.454 kb on + strandat 617.454 kb on + strandat 617.457 kb on + strandat 617.549 kb on + strandat 617.549 kb on + strandat 617.660 kb on + strandat 617.660 kb on + strandat 617.661 kb on - strandat 617.669 kb on + strandat 617.670 kb on - strandat 617.670 kb on - strandat 617.949 kb on - strand, within SM_b20827at 617.949 kb on - strandat 617.963 kb on + strand, within SM_b20827at 617.964 kb on - strand, within SM_b20827at 618.128 kb on + strand, within SM_b20827at 618.129 kb on - strand, within SM_b20827at 618.196 kb on - strandat 618.198 kb on + strandat 618.198 kb on + strandat 618.198 kb on + strandat 618.199 kb on - strandat 618.204 kb on - strandat 618.204 kb on - strandat 618.354 kb on + strandat 618.355 kb on - strandat 618.394 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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615,872 + +0.5
615,872 + +2.1
615,873 - -0.5
615,893 + +0.6
615,894 - +2.2
615,956 + +0.9
615,971 - +1.1
616,036 + -2.5
616,037 - +1.2
616,037 - -1.5
616,037 - -0.7
616,037 - -0.9
616,037 - -3.5
616,058 + -0.9
616,058 + +2.3
616,059 - -0.1
616,059 - +2.1
616,059 - +2.1
616,059 - -0.3
616,070 + +0.3
616,070 + +0.3
616,071 - +4.3
616,071 - +0.7
616,071 - +0.1
616,088 + -0.3
616,089 - -0.7
616,139 + SM_b20825 0.15 -1.3
616,140 - -0.7
616,191 + SM_b20825 0.22 +1.7
616,192 - SM_b20825 0.22 +0.4
616,290 - SM_b20825 0.35 +1.3
616,296 - SM_b20825 0.35 -0.2
616,296 - SM_b20825 0.35 -1.0
616,478 + SM_b20825 0.59 -1.0
616,479 - SM_b20825 0.59 -2.0
616,479 - SM_b20825 0.59 -1.7
616,535 + SM_b20825 0.66 -1.5
616,536 - SM_b20825 0.67 -0.5
616,554 + SM_b20825 0.69 -2.8
616,554 + SM_b20825 0.69 -2.8
616,555 - SM_b20825 0.69 +1.8
616,555 - SM_b20825 0.69 -2.4
616,697 + SM_b20825 0.87 +2.3
616,698 - SM_b20825 0.88 -1.1
616,740 + -0.7
616,763 + -0.6
616,858 + +1.1
616,859 - -1.5
616,859 - -2.1
616,990 + SM_b20826 0.24 +1.5
616,990 + SM_b20826 0.24 -1.3
616,990 + SM_b20826 0.24 -2.1
616,990 + SM_b20826 0.24 +0.7
617,035 + SM_b20826 0.33 -1.5
617,035 + SM_b20826 0.33 -0.5
617,054 + SM_b20826 0.36 -0.4
617,054 + SM_b20826 0.36 -2.6
617,115 + SM_b20826 0.48 -0.0
617,116 - SM_b20826 0.48 +0.2
617,302 + SM_b20826 0.83 +0.2
617,302 + SM_b20826 0.83 -0.8
617,303 - SM_b20826 0.83 +0.6
617,323 + SM_b20826 0.87 -2.5
617,323 + SM_b20826 0.87 +0.7
617,324 - SM_b20826 0.87 -2.6
617,328 - SM_b20826 0.87 -1.0
617,328 - SM_b20826 0.87 -4.3
617,403 + -0.8
617,403 + +1.3
617,454 + -0.4
617,454 + +0.9
617,454 + -0.9
617,454 + -0.8
617,454 + +0.0
617,454 + -0.1
617,457 + -0.2
617,549 + -2.1
617,549 + +0.4
617,660 + -0.8
617,660 + +0.6
617,661 - +0.5
617,669 + -0.1
617,670 - -3.6
617,670 - -0.4
617,949 - SM_b20827 0.56 -2.3
617,949 - -0.7
617,963 + SM_b20827 0.59 -0.7
617,964 - SM_b20827 0.59 +4.3
618,128 + SM_b20827 0.87 +0.9
618,129 - SM_b20827 0.87 +0.7
618,196 - -1.3
618,198 + -3.7
618,198 + -1.7
618,198 + +3.7
618,199 - -1.9
618,204 - -0.5
618,204 - +1.1
618,354 + -0.7
618,355 - -1.5
618,394 - -0.9

Or see this region's nucleotide sequence