Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20767 and SM_b20768 are separated by 16 nucleotides SM_b20768 and SM_b20769 are separated by 53 nucleotides
SM_b20767: SM_b20767 - dihydroxyacetone kinase, at 1,558,643 to 1,560,361
_b20767
SM_b20768: SM_b20768 - hypothetical protein, at 1,560,378 to 1,561,319
_b20768
SM_b20769: SM_b20769 - hypothetical protein, at 1,561,373 to 1,562,911
_b20769
Position (kb)
1560
1561
1562 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1559.571 kb on + strand, within SM_b20767 at 1559.572 kb on - strand, within SM_b20767 at 1559.651 kb on - strand, within SM_b20767 at 1560.294 kb on + strand at 1560.294 kb on + strand at 1560.295 kb on - strand at 1560.404 kb on + strand at 1560.405 kb on - strand at 1560.405 kb on - strand at 1560.415 kb on + strand at 1560.416 kb on - strand at 1560.458 kb on - strand at 1560.595 kb on + strand, within SM_b20768 at 1560.595 kb on + strand, within SM_b20768 at 1560.613 kb on + strand, within SM_b20768 at 1560.613 kb on + strand, within SM_b20768 at 1560.614 kb on - strand, within SM_b20768 at 1560.766 kb on + strand, within SM_b20768 at 1560.766 kb on + strand, within SM_b20768 at 1560.767 kb on - strand, within SM_b20768 at 1560.767 kb on - strand, within SM_b20768 at 1560.778 kb on + strand, within SM_b20768 at 1560.778 kb on + strand, within SM_b20768 at 1560.779 kb on - strand, within SM_b20768 at 1560.779 kb on - strand, within SM_b20768 at 1561.003 kb on + strand, within SM_b20768 at 1561.035 kb on + strand, within SM_b20768 at 1561.035 kb on + strand, within SM_b20768 at 1561.035 kb on + strand, within SM_b20768 at 1561.036 kb on - strand, within SM_b20768 at 1561.036 kb on - strand, within SM_b20768 at 1561.261 kb on + strand at 1561.348 kb on + strand at 1561.639 kb on - strand, within SM_b20769 at 1561.639 kb on - strand, within SM_b20769 at 1561.698 kb on + strand, within SM_b20769 at 1561.770 kb on + strand, within SM_b20769 at 1561.770 kb on + strand, within SM_b20769 at 1561.821 kb on + strand, within SM_b20769 at 1561.821 kb on + strand, within SM_b20769 at 1561.821 kb on + strand, within SM_b20769 at 1561.821 kb on + strand, within SM_b20769 at 1562.161 kb on - strand, within SM_b20769
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 1,559,571 + SM_b20767 0.54 -0.1 1,559,572 - SM_b20767 0.54 -0.7 1,559,651 - SM_b20767 0.59 +1.0 1,560,294 + -0.5 1,560,294 + -0.5 1,560,295 - -2.7 1,560,404 + +1.5 1,560,405 - +1.5 1,560,405 - +3.1 1,560,415 + +0.6 1,560,416 - -0.1 1,560,458 - -1.1 1,560,595 + SM_b20768 0.23 +0.4 1,560,595 + SM_b20768 0.23 +0.8 1,560,613 + SM_b20768 0.25 +0.9 1,560,613 + SM_b20768 0.25 +0.7 1,560,614 - SM_b20768 0.25 -1.4 1,560,766 + SM_b20768 0.41 -2.1 1,560,766 + SM_b20768 0.41 +0.2 1,560,767 - SM_b20768 0.41 +1.7 1,560,767 - SM_b20768 0.41 +0.1 1,560,778 + SM_b20768 0.42 -1.4 1,560,778 + SM_b20768 0.42 -2.3 1,560,779 - SM_b20768 0.43 -2.5 1,560,779 - SM_b20768 0.43 -2.6 1,561,003 + SM_b20768 0.66 -0.7 1,561,035 + SM_b20768 0.70 -0.0 1,561,035 + SM_b20768 0.70 -3.9 1,561,035 + SM_b20768 0.70 -1.7 1,561,036 - SM_b20768 0.70 -1.8 1,561,036 - SM_b20768 0.70 +0.3 1,561,261 + +0.9 1,561,348 + -0.7 1,561,639 - SM_b20769 0.17 +0.7 1,561,639 - SM_b20769 0.17 -0.6 1,561,698 + SM_b20769 0.21 +0.5 1,561,770 + SM_b20769 0.26 +0.0 1,561,770 + SM_b20769 0.26 +0.9 1,561,821 + SM_b20769 0.29 +1.2 1,561,821 + SM_b20769 0.29 +0.0 1,561,821 + SM_b20769 0.29 +0.5 1,561,821 + SM_b20769 0.29 +0.7 1,562,161 - SM_b20769 0.51 -0.1
Or see this region's nucleotide sequence