Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20755 and SM_b20756 are separated by 12 nucleotides SM_b20756 and SM_b20757 are separated by 225 nucleotides
SM_b20755: SM_b20755 - propionyl-CoA carboxylase subunit beta, at 1,545,196 to 1,546,728
_b20755
SM_b20756: SM_b20756 - propionyl-CoA carboxylase subunit alpha, at 1,546,741 to 1,548,753
_b20756
SM_b20757: SM_b20757 - methylmalonyl-CoA mutase, at 1,548,979 to 1,551,117
_b20757
Position (kb)
1546
1547
1548
1549 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 1545.760 kb on + strand, within SM_b20755 at 1545.760 kb on + strand, within SM_b20755 at 1545.761 kb on - strand, within SM_b20755 at 1546.011 kb on - strand, within SM_b20755 at 1546.036 kb on + strand, within SM_b20755 at 1546.037 kb on - strand, within SM_b20755 at 1546.351 kb on + strand, within SM_b20755 at 1546.352 kb on - strand, within SM_b20755 at 1546.352 kb on - strand, within SM_b20755 at 1546.399 kb on + strand, within SM_b20755 at 1546.400 kb on - strand, within SM_b20755 at 1546.411 kb on + strand, within SM_b20755 at 1546.453 kb on + strand, within SM_b20755 at 1546.453 kb on + strand, within SM_b20755 at 1546.454 kb on - strand, within SM_b20755 at 1546.454 kb on - strand, within SM_b20755 at 1546.513 kb on + strand, within SM_b20755 at 1546.514 kb on - strand, within SM_b20755 at 1546.614 kb on - strand at 1546.928 kb on - strand at 1546.928 kb on - strand at 1546.928 kb on - strand at 1546.944 kb on + strand, within SM_b20756 at 1547.152 kb on - strand, within SM_b20756 at 1547.152 kb on - strand, within SM_b20756 at 1547.410 kb on - strand, within SM_b20756 at 1547.416 kb on + strand, within SM_b20756 at 1547.416 kb on + strand, within SM_b20756 at 1547.417 kb on - strand, within SM_b20756 at 1547.417 kb on - strand, within SM_b20756 at 1547.909 kb on - strand, within SM_b20756 at 1547.909 kb on - strand, within SM_b20756 at 1547.911 kb on + strand, within SM_b20756 at 1547.911 kb on + strand, within SM_b20756 at 1547.912 kb on - strand, within SM_b20756 at 1548.086 kb on - strand, within SM_b20756 at 1548.313 kb on + strand, within SM_b20756 at 1548.313 kb on + strand, within SM_b20756 at 1548.313 kb on + strand, within SM_b20756 at 1548.314 kb on - strand, within SM_b20756 at 1548.314 kb on - strand, within SM_b20756 at 1548.440 kb on + strand, within SM_b20756 at 1548.658 kb on - strand at 1548.816 kb on + strand at 1549.178 kb on - strand at 1549.208 kb on - strand, within SM_b20757 at 1549.246 kb on + strand, within SM_b20757 at 1549.570 kb on + strand, within SM_b20757 at 1549.570 kb on + strand, within SM_b20757 at 1549.571 kb on - strand, within SM_b20757 at 1549.576 kb on + strand, within SM_b20757 at 1549.577 kb on - strand at 1549.623 kb on + strand, within SM_b20757 at 1549.738 kb on + strand, within SM_b20757
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 1,545,760 + SM_b20755 0.37 -0.1 1,545,760 + SM_b20755 0.37 -0.9 1,545,761 - SM_b20755 0.37 +4.8 1,546,011 - SM_b20755 0.53 +2.6 1,546,036 + SM_b20755 0.55 -3.7 1,546,037 - SM_b20755 0.55 +0.9 1,546,351 + SM_b20755 0.75 -1.7 1,546,352 - SM_b20755 0.75 -0.1 1,546,352 - SM_b20755 0.75 +0.9 1,546,399 + SM_b20755 0.78 -2.9 1,546,400 - SM_b20755 0.79 -1.4 1,546,411 + SM_b20755 0.79 +0.6 1,546,453 + SM_b20755 0.82 -0.7 1,546,453 + SM_b20755 0.82 -0.0 1,546,454 - SM_b20755 0.82 -0.9 1,546,454 - SM_b20755 0.82 +0.3 1,546,513 + SM_b20755 0.86 -1.5 1,546,514 - SM_b20755 0.86 -1.1 1,546,614 - +1.6 1,546,928 - +1.3 1,546,928 - -0.2 1,546,928 - -0.5 1,546,944 + SM_b20756 0.10 -2.2 1,547,152 - SM_b20756 0.20 +1.0 1,547,152 - SM_b20756 0.20 +0.8 1,547,410 - SM_b20756 0.33 +1.1 1,547,416 + SM_b20756 0.34 +1.1 1,547,416 + SM_b20756 0.34 -2.1 1,547,417 - SM_b20756 0.34 -0.1 1,547,417 - SM_b20756 0.34 +0.1 1,547,909 - SM_b20756 0.58 +1.3 1,547,909 - SM_b20756 0.58 +1.7 1,547,911 + SM_b20756 0.58 -4.4 1,547,911 + SM_b20756 0.58 +0.5 1,547,912 - SM_b20756 0.58 +1.9 1,548,086 - SM_b20756 0.67 +2.9 1,548,313 + SM_b20756 0.78 -0.7 1,548,313 + SM_b20756 0.78 -1.7 1,548,313 + SM_b20756 0.78 +2.7 1,548,314 - SM_b20756 0.78 +2.6 1,548,314 - SM_b20756 0.78 -0.1 1,548,440 + SM_b20756 0.84 +0.2 1,548,658 - +1.3 1,548,816 + -0.2 1,549,178 - -2.3 1,549,208 - SM_b20757 0.11 -1.1 1,549,246 + SM_b20757 0.12 +1.4 1,549,570 + SM_b20757 0.28 -2.4 1,549,570 + SM_b20757 0.28 -1.4 1,549,571 - SM_b20757 0.28 -1.1 1,549,576 + SM_b20757 0.28 -1.8 1,549,577 - +3.2 1,549,623 + SM_b20757 0.30 +2.4 1,549,738 + SM_b20757 0.35 +1.2
Or see this region's nucleotide sequence