Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20746 and SM_b20747 are separated by 19 nucleotides SM_b20747 and SM_b20748 are separated by 151 nucleotides SM_b20748 and SM_b20749 are separated by 506 nucleotides
SM_b20746: SM_b20746 - hypothetical protein, at 1,535,474 to 1,535,659
_b20746
SM_b20747: SM_b20747 - hypothetical protein, at 1,535,679 to 1,536,353
_b20747
SM_b20748: SM_b20748 - glycosyltransferase, at 1,536,505 to 1,537,569
_b20748
SM_b20749: SM_b20749 - D-mannonate oxidoreductase, at 1,538,076 to 1,539,539
_b20749
Position (kb)
1536
1537
1538 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1535.622 kb on - strand, within SM_b20746 at 1535.670 kb on + strand at 1535.840 kb on + strand, within SM_b20747 at 1535.840 kb on + strand, within SM_b20747 at 1535.841 kb on - strand, within SM_b20747 at 1535.926 kb on + strand, within SM_b20747 at 1535.926 kb on + strand, within SM_b20747 at 1535.927 kb on - strand, within SM_b20747 at 1535.927 kb on - strand, within SM_b20747 at 1535.958 kb on + strand, within SM_b20747 at 1536.032 kb on - strand, within SM_b20747 at 1536.032 kb on - strand, within SM_b20747 at 1536.032 kb on - strand, within SM_b20747 at 1536.060 kb on + strand, within SM_b20747 at 1536.061 kb on - strand, within SM_b20747 at 1536.061 kb on - strand, within SM_b20747 at 1536.090 kb on + strand, within SM_b20747 at 1536.090 kb on + strand, within SM_b20747 at 1536.090 kb on + strand, within SM_b20747 at 1536.090 kb on + strand, within SM_b20747 at 1536.090 kb on + strand, within SM_b20747 at 1536.090 kb on + strand, within SM_b20747 at 1536.090 kb on + strand, within SM_b20747 at 1536.091 kb on - strand, within SM_b20747 at 1536.091 kb on - strand, within SM_b20747 at 1536.091 kb on - strand, within SM_b20747 at 1536.091 kb on - strand, within SM_b20747 at 1536.091 kb on - strand, within SM_b20747 at 1536.091 kb on - strand, within SM_b20747 at 1536.092 kb on + strand, within SM_b20747 at 1536.092 kb on + strand, within SM_b20747 at 1536.092 kb on + strand, within SM_b20747 at 1536.092 kb on + strand, within SM_b20747 at 1536.092 kb on + strand, within SM_b20747 at 1536.092 kb on + strand, within SM_b20747 at 1536.092 kb on + strand, within SM_b20747 at 1536.093 kb on - strand, within SM_b20747 at 1536.093 kb on - strand, within SM_b20747 at 1536.093 kb on - strand, within SM_b20747 at 1536.113 kb on - strand, within SM_b20747 at 1536.460 kb on + strand at 1536.461 kb on - strand at 1536.817 kb on + strand, within SM_b20748 at 1536.981 kb on - strand, within SM_b20748 at 1537.004 kb on + strand, within SM_b20748 at 1537.005 kb on - strand, within SM_b20748 at 1537.103 kb on + strand, within SM_b20748 at 1537.275 kb on - strand, within SM_b20748 at 1537.280 kb on + strand, within SM_b20748 at 1537.280 kb on + strand, within SM_b20748 at 1537.281 kb on - strand, within SM_b20748 at 1537.281 kb on - strand, within SM_b20748 at 1537.442 kb on - strand, within SM_b20748 at 1537.467 kb on - strand at 1537.514 kb on + strand at 1537.515 kb on - strand at 1537.867 kb on + strand at 1537.867 kb on + strand at 1537.867 kb on + strand at 1537.867 kb on + strand at 1537.867 kb on + strand at 1537.867 kb on + strand at 1537.867 kb on + strand at 1537.869 kb on + strand at 1537.869 kb on + strand at 1537.869 kb on + strand at 1537.931 kb on - strand at 1538.133 kb on + strand at 1538.134 kb on - strand at 1538.208 kb on + strand at 1538.209 kb on - strand at 1538.310 kb on + strand, within SM_b20749 at 1538.310 kb on + strand, within SM_b20749 at 1538.466 kb on + strand, within SM_b20749 at 1538.466 kb on + strand, within SM_b20749 at 1538.467 kb on - strand, within SM_b20749
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 1,535,622 - SM_b20746 0.80 -0.7 1,535,670 + +0.7 1,535,840 + SM_b20747 0.24 -0.4 1,535,840 + SM_b20747 0.24 +1.9 1,535,841 - SM_b20747 0.24 -0.7 1,535,926 + SM_b20747 0.37 -1.3 1,535,926 + SM_b20747 0.37 -0.8 1,535,927 - SM_b20747 0.37 +1.6 1,535,927 - SM_b20747 0.37 -0.2 1,535,958 + SM_b20747 0.41 -2.9 1,536,032 - SM_b20747 0.52 +0.9 1,536,032 - SM_b20747 0.52 +1.2 1,536,032 - SM_b20747 0.52 +1.7 1,536,060 + SM_b20747 0.56 +1.6 1,536,061 - SM_b20747 0.57 -2.9 1,536,061 - SM_b20747 0.57 +0.8 1,536,090 + SM_b20747 0.61 +0.6 1,536,090 + SM_b20747 0.61 +4.6 1,536,090 + SM_b20747 0.61 -2.7 1,536,090 + SM_b20747 0.61 +0.1 1,536,090 + SM_b20747 0.61 +2.5 1,536,090 + SM_b20747 0.61 +1.2 1,536,090 + SM_b20747 0.61 +0.6 1,536,091 - SM_b20747 0.61 +0.3 1,536,091 - SM_b20747 0.61 +0.5 1,536,091 - SM_b20747 0.61 +1.3 1,536,091 - SM_b20747 0.61 -0.1 1,536,091 - SM_b20747 0.61 +0.7 1,536,091 - SM_b20747 0.61 -2.9 1,536,092 + SM_b20747 0.61 +0.3 1,536,092 + SM_b20747 0.61 -1.0 1,536,092 + SM_b20747 0.61 +0.2 1,536,092 + SM_b20747 0.61 -0.4 1,536,092 + SM_b20747 0.61 +0.8 1,536,092 + SM_b20747 0.61 -0.3 1,536,092 + SM_b20747 0.61 -1.9 1,536,093 - SM_b20747 0.61 +0.4 1,536,093 - SM_b20747 0.61 +0.4 1,536,093 - SM_b20747 0.61 +0.4 1,536,113 - SM_b20747 0.64 -0.8 1,536,460 + +0.2 1,536,461 - +0.9 1,536,817 + SM_b20748 0.29 -0.3 1,536,981 - SM_b20748 0.45 -0.3 1,537,004 + SM_b20748 0.47 -1.7 1,537,005 - SM_b20748 0.47 +0.4 1,537,103 + SM_b20748 0.56 -0.7 1,537,275 - SM_b20748 0.72 +0.1 1,537,280 + SM_b20748 0.73 +0.9 1,537,280 + SM_b20748 0.73 +0.0 1,537,281 - SM_b20748 0.73 -0.9 1,537,281 - SM_b20748 0.73 -3.3 1,537,442 - SM_b20748 0.88 +0.1 1,537,467 - +0.7 1,537,514 + +0.5 1,537,515 - -2.5 1,537,867 + -0.0 1,537,867 + -0.7 1,537,867 + -1.9 1,537,867 + +0.5 1,537,867 + +0.4 1,537,867 + -0.1 1,537,867 + -0.1 1,537,869 + +0.1 1,537,869 + +0.7 1,537,869 + -0.6 1,537,931 - +3.2 1,538,133 + +1.0 1,538,134 - +0.3 1,538,208 + +0.9 1,538,209 - -0.1 1,538,310 + SM_b20749 0.16 +0.4 1,538,310 + SM_b20749 0.16 -0.1 1,538,466 + SM_b20749 0.27 -1.0 1,538,466 + SM_b20749 0.27 -0.3 1,538,467 - SM_b20749 0.27 -2.5
Or see this region's nucleotide sequence