Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20664

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20663 and SM_b20664 are separated by 118 nucleotidesSM_b20664 and SM_b20665 are separated by 76 nucleotides SM_b20663: SM_b20663 - hypothetical protein, at 1,464,301 to 1,465,284 _b20663 SM_b20664: SM_b20664 - GntR family transcriptional regulator, at 1,465,403 to 1,466,092 _b20664 SM_b20665: SM_b20665 - partial transposase of insertion sequence ISRm17 protein, at 1,466,169 to 1,466,822 _b20665 Position (kb) 1465 1466 1467Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1464.466 kb on + strand, within SM_b20663at 1464.658 kb on - strand, within SM_b20663at 1464.833 kb on + strand, within SM_b20663at 1464.833 kb on + strand, within SM_b20663at 1464.834 kb on - strand, within SM_b20663at 1464.904 kb on - strand, within SM_b20663at 1464.904 kb on - strand, within SM_b20663at 1464.904 kb on - strand, within SM_b20663at 1464.904 kb on - strand, within SM_b20663at 1465.001 kb on + strand, within SM_b20663at 1465.002 kb on - strandat 1465.268 kb on - strandat 1465.268 kb on - strandat 1465.268 kb on - strandat 1465.268 kb on - strandat 1465.276 kb on + strandat 1465.277 kb on - strandat 1465.277 kb on - strandat 1465.277 kb on - strandat 1465.277 kb on - strandat 1465.277 kb on - strandat 1465.394 kb on - strandat 1465.482 kb on + strand, within SM_b20664at 1465.483 kb on - strand, within SM_b20664at 1465.528 kb on - strand, within SM_b20664at 1465.537 kb on + strand, within SM_b20664at 1465.537 kb on + strand, within SM_b20664at 1465.539 kb on + strand, within SM_b20664at 1465.539 kb on + strand, within SM_b20664at 1465.540 kb on - strand, within SM_b20664at 1465.540 kb on - strand, within SM_b20664at 1465.540 kb on - strand, within SM_b20664at 1465.540 kb on - strand, within SM_b20664at 1465.540 kb on - strand, within SM_b20664at 1465.545 kb on + strand, within SM_b20664at 1465.546 kb on - strand, within SM_b20664at 1465.594 kb on - strand, within SM_b20664at 1465.777 kb on - strand, within SM_b20664at 1466.002 kb on + strand, within SM_b20664at 1466.002 kb on + strand, within SM_b20664at 1466.002 kb on + strand, within SM_b20664at 1466.002 kb on + strand, within SM_b20664at 1466.002 kb on + strand, within SM_b20664at 1466.002 kb on + strand, within SM_b20664at 1466.059 kb on + strandat 1466.059 kb on + strandat 1466.065 kb on + strandat 1466.065 kb on + strandat 1466.065 kb on + strandat 1466.065 kb on + strandat 1466.065 kb on + strandat 1466.065 kb on + strandat 1466.066 kb on - strandat 1466.066 kb on - strandat 1466.136 kb on + strandat 1466.154 kb on + strandat 1466.155 kb on - strandat 1466.155 kb on - strandat 1466.280 kb on - strand, within SM_b20665at 1466.280 kb on - strand, within SM_b20665at 1466.280 kb on - strand, within SM_b20665at 1466.291 kb on + strand, within SM_b20665at 1466.963 kb on + strandat 1467.090 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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1,464,466 + SM_b20663 0.17 +0.6
1,464,658 - SM_b20663 0.36 -0.7
1,464,833 + SM_b20663 0.54 -1.3
1,464,833 + SM_b20663 0.54 -0.1
1,464,834 - SM_b20663 0.54 +1.1
1,464,904 - SM_b20663 0.61 -0.4
1,464,904 - SM_b20663 0.61 +0.3
1,464,904 - SM_b20663 0.61 -0.7
1,464,904 - SM_b20663 0.61 +0.4
1,465,001 + SM_b20663 0.71 -0.3
1,465,002 - +4.1
1,465,268 - +3.0
1,465,268 - +0.1
1,465,268 - +0.5
1,465,268 - -0.3
1,465,276 + -0.4
1,465,277 - +0.8
1,465,277 - -1.0
1,465,277 - +0.6
1,465,277 - +0.2
1,465,277 - +0.6
1,465,394 - +0.2
1,465,482 + SM_b20664 0.11 -1.4
1,465,483 - SM_b20664 0.12 -0.1
1,465,528 - SM_b20664 0.18 +0.1
1,465,537 + SM_b20664 0.19 +1.8
1,465,537 + SM_b20664 0.19 -0.3
1,465,539 + SM_b20664 0.20 -0.2
1,465,539 + SM_b20664 0.20 +1.0
1,465,540 - SM_b20664 0.20 -1.2
1,465,540 - SM_b20664 0.20 -3.5
1,465,540 - SM_b20664 0.20 +0.7
1,465,540 - SM_b20664 0.20 -0.5
1,465,540 - SM_b20664 0.20 +0.3
1,465,545 + SM_b20664 0.21 +1.2
1,465,546 - SM_b20664 0.21 +0.5
1,465,594 - SM_b20664 0.28 -2.5
1,465,777 - SM_b20664 0.54 +2.3
1,466,002 + SM_b20664 0.87 +0.4
1,466,002 + SM_b20664 0.87 +0.9
1,466,002 + SM_b20664 0.87 +1.1
1,466,002 + SM_b20664 0.87 +1.3
1,466,002 + SM_b20664 0.87 -0.9
1,466,002 + SM_b20664 0.87 -0.7
1,466,059 + +0.9
1,466,059 + -2.7
1,466,065 + +1.8
1,466,065 + +0.2
1,466,065 + +0.0
1,466,065 + -0.5
1,466,065 + -3.1
1,466,065 + +2.5
1,466,066 - +0.1
1,466,066 - +3.4
1,466,136 + +0.3
1,466,154 + -3.5
1,466,155 - -1.1
1,466,155 - -1.2
1,466,280 - SM_b20665 0.17 +2.7
1,466,280 - SM_b20665 0.17 +0.2
1,466,280 - SM_b20665 0.17 +0.5
1,466,291 + SM_b20665 0.19 +0.9
1,466,963 + +0.9
1,467,090 + -3.7

Or see this region's nucleotide sequence