Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20659 and SM_b20660 are separated by 192 nucleotides SM_b20660 and SM_b20661 are separated by 134 nucleotides
SM_b20659: SM_b20659 - sugar uptake ABC transporter permease, at 1,459,807 to 1,460,739
_b20659
SM_b20660: SM_b20660 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,460,932 to 1,462,236
_b20660
SM_b20661: SM_b20661 - sugar uptake ABC transporter ATP-binding protein, at 1,462,371 to 1,463,438
_b20661
Position (kb)
1460
1461
1462
1463 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1460.004 kb on - strand, within SM_b20659 at 1460.004 kb on - strand, within SM_b20659 at 1460.004 kb on - strand, within SM_b20659 at 1460.090 kb on + strand, within SM_b20659 at 1460.475 kb on - strand, within SM_b20659 at 1460.480 kb on + strand, within SM_b20659 at 1460.481 kb on - strand, within SM_b20659 at 1460.495 kb on + strand, within SM_b20659 at 1460.496 kb on - strand, within SM_b20659 at 1460.728 kb on + strand at 1460.877 kb on + strand at 1460.900 kb on + strand at 1460.943 kb on - strand at 1460.946 kb on - strand at 1461.035 kb on + strand at 1461.036 kb on - strand at 1461.062 kb on + strand at 1461.116 kb on + strand, within SM_b20660 at 1461.245 kb on + strand, within SM_b20660 at 1461.246 kb on - strand, within SM_b20660 at 1461.402 kb on - strand, within SM_b20660 at 1461.402 kb on - strand, within SM_b20660 at 1461.404 kb on + strand, within SM_b20660 at 1461.405 kb on - strand, within SM_b20660 at 1461.405 kb on - strand, within SM_b20660 at 1461.434 kb on - strand, within SM_b20660 at 1461.506 kb on + strand, within SM_b20660 at 1461.506 kb on + strand, within SM_b20660 at 1461.507 kb on - strand, within SM_b20660 at 1461.507 kb on - strand, within SM_b20660 at 1461.521 kb on + strand, within SM_b20660 at 1461.617 kb on + strand at 1461.617 kb on + strand, within SM_b20660 at 1461.618 kb on - strand, within SM_b20660 at 1461.824 kb on + strand, within SM_b20660 at 1461.824 kb on + strand, within SM_b20660 at 1461.825 kb on - strand, within SM_b20660 at 1461.825 kb on - strand, within SM_b20660 at 1461.825 kb on - strand, within SM_b20660 at 1461.842 kb on + strand, within SM_b20660 at 1461.843 kb on - strand, within SM_b20660 at 1461.843 kb on - strand, within SM_b20660 at 1461.855 kb on - strand, within SM_b20660 at 1461.855 kb on - strand, within SM_b20660 at 1461.942 kb on + strand, within SM_b20660 at 1462.053 kb on + strand, within SM_b20660 at 1462.136 kb on + strand at 1462.136 kb on + strand at 1462.137 kb on - strand at 1462.239 kb on + strand at 1462.240 kb on - strand at 1462.240 kb on - strand at 1462.240 kb on - strand at 1462.588 kb on + strand, within SM_b20661 at 1462.588 kb on + strand, within SM_b20661 at 1462.588 kb on + strand, within SM_b20661 at 1462.588 kb on + strand, within SM_b20661 at 1462.607 kb on - strand, within SM_b20661 at 1462.737 kb on + strand, within SM_b20661 at 1462.874 kb on - strand, within SM_b20661 at 1463.171 kb on + strand, within SM_b20661 at 1463.179 kb on + strand, within SM_b20661
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 1,460,004 - SM_b20659 0.21 -3.0 1,460,004 - SM_b20659 0.21 -0.5 1,460,004 - SM_b20659 0.21 -3.5 1,460,090 + SM_b20659 0.30 +0.8 1,460,475 - SM_b20659 0.72 +1.4 1,460,480 + SM_b20659 0.72 +0.5 1,460,481 - SM_b20659 0.72 +3.1 1,460,495 + SM_b20659 0.74 -2.1 1,460,496 - SM_b20659 0.74 -1.2 1,460,728 + -0.1 1,460,877 + +0.9 1,460,900 + +0.4 1,460,943 - -0.7 1,460,946 - +0.2 1,461,035 + +0.8 1,461,036 - -0.1 1,461,062 + -2.0 1,461,116 + SM_b20660 0.14 +0.7 1,461,245 + SM_b20660 0.24 +0.5 1,461,246 - SM_b20660 0.24 +0.0 1,461,402 - SM_b20660 0.36 -0.6 1,461,402 - SM_b20660 0.36 +0.3 1,461,404 + SM_b20660 0.36 +0.5 1,461,405 - SM_b20660 0.36 -0.8 1,461,405 - SM_b20660 0.36 -1.9 1,461,434 - SM_b20660 0.38 +0.4 1,461,506 + SM_b20660 0.44 -2.0 1,461,506 + SM_b20660 0.44 +0.7 1,461,507 - SM_b20660 0.44 -0.8 1,461,507 - SM_b20660 0.44 -0.8 1,461,521 + SM_b20660 0.45 -0.1 1,461,617 + +1.9 1,461,617 + SM_b20660 0.52 +2.7 1,461,618 - SM_b20660 0.53 -0.6 1,461,824 + SM_b20660 0.68 -1.8 1,461,824 + SM_b20660 0.68 +0.6 1,461,825 - SM_b20660 0.68 -0.3 1,461,825 - SM_b20660 0.68 -1.0 1,461,825 - SM_b20660 0.68 +1.7 1,461,842 + SM_b20660 0.70 -0.6 1,461,843 - SM_b20660 0.70 +0.1 1,461,843 - SM_b20660 0.70 -1.5 1,461,855 - SM_b20660 0.71 +0.9 1,461,855 - SM_b20660 0.71 +0.5 1,461,942 + SM_b20660 0.77 -2.4 1,462,053 + SM_b20660 0.86 -1.9 1,462,136 + +1.5 1,462,136 + +2.2 1,462,137 - +0.9 1,462,239 + -0.2 1,462,240 - -2.6 1,462,240 - +0.7 1,462,240 - -2.6 1,462,588 + SM_b20661 0.20 -3.7 1,462,588 + SM_b20661 0.20 +0.2 1,462,588 + SM_b20661 0.20 -2.4 1,462,588 + SM_b20661 0.20 -2.4 1,462,607 - SM_b20661 0.22 +1.0 1,462,737 + SM_b20661 0.34 +0.2 1,462,874 - SM_b20661 0.47 +0.1 1,463,171 + SM_b20661 0.75 +0.1 1,463,179 + SM_b20661 0.76 -0.3
Or see this region's nucleotide sequence