Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20623 and SM_b20624 overlap by 4 nucleotides SM_b20624 and SM_b20625 are separated by 24 nucleotides
SM_b20623: SM_b20623 - methylthioribose kinase, at 1,643,217 to 1,644,488
_b20623
SM_b20624: SM_b20624 - methylthioribose-1-phosphate isomerase, at 1,644,485 to 1,645,579
_b20624
SM_b20625: SM_b20625 - hypothetical protein, at 1,645,604 to 1,646,809
_b20625
Position (kb)
1644
1645
1646 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1643.563 kb on - strand, within SM_b20623 at 1643.563 kb on - strand, within SM_b20623 at 1643.621 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.624 kb on - strand, within SM_b20623 at 1643.624 kb on - strand, within SM_b20623 at 1643.624 kb on - strand, within SM_b20623 at 1643.968 kb on + strand, within SM_b20623 at 1643.969 kb on - strand, within SM_b20623 at 1643.988 kb on + strand, within SM_b20623 at 1643.989 kb on - strand, within SM_b20623 at 1643.989 kb on - strand, within SM_b20623 at 1643.989 kb on - strand, within SM_b20623 at 1644.042 kb on + strand, within SM_b20623 at 1644.042 kb on + strand, within SM_b20623 at 1644.043 kb on - strand, within SM_b20623 at 1644.099 kb on + strand, within SM_b20623 at 1644.261 kb on - strand, within SM_b20623 at 1644.506 kb on + strand at 1644.507 kb on - strand at 1644.511 kb on + strand at 1644.512 kb on - strand at 1644.512 kb on - strand at 1645.004 kb on + strand at 1645.029 kb on - strand, within SM_b20624 at 1645.064 kb on + strand, within SM_b20624 at 1645.064 kb on + strand, within SM_b20624 at 1645.065 kb on - strand, within SM_b20624 at 1645.301 kb on + strand, within SM_b20624 at 1645.302 kb on - strand, within SM_b20624 at 1645.511 kb on - strand at 1645.613 kb on + strand at 1645.614 kb on - strand at 1645.614 kb on - strand at 1645.639 kb on - strand at 1645.639 kb on - strand at 1645.672 kb on - strand at 1645.672 kb on - strand at 1645.672 kb on - strand at 1646.082 kb on + strand, within SM_b20625 at 1646.082 kb on + strand, within SM_b20625 at 1646.083 kb on - strand, within SM_b20625 at 1646.083 kb on - strand, within SM_b20625 at 1646.083 kb on - strand, within SM_b20625 at 1646.083 kb on - strand, within SM_b20625 at 1646.083 kb on - strand, within SM_b20625 at 1646.297 kb on - strand, within SM_b20625 at 1646.298 kb on + strand, within SM_b20625 at 1646.307 kb on - strand, within SM_b20625
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 1,643,563 - SM_b20623 0.27 -0.0 1,643,563 - SM_b20623 0.27 -0.1 1,643,621 + SM_b20623 0.32 -0.3 1,643,623 + SM_b20623 0.32 -0.4 1,643,623 + SM_b20623 0.32 +0.4 1,643,623 + SM_b20623 0.32 +1.2 1,643,623 + SM_b20623 0.32 -0.6 1,643,623 + SM_b20623 0.32 +0.2 1,643,623 + SM_b20623 0.32 +0.1 1,643,623 + SM_b20623 0.32 +0.2 1,643,623 + SM_b20623 0.32 +0.6 1,643,623 + SM_b20623 0.32 +0.2 1,643,624 - SM_b20623 0.32 -0.7 1,643,624 - SM_b20623 0.32 +0.4 1,643,624 - SM_b20623 0.32 -0.4 1,643,968 + SM_b20623 0.59 -1.1 1,643,969 - SM_b20623 0.59 -2.6 1,643,988 + SM_b20623 0.61 -0.1 1,643,989 - SM_b20623 0.61 +4.5 1,643,989 - SM_b20623 0.61 +0.2 1,643,989 - SM_b20623 0.61 -1.1 1,644,042 + SM_b20623 0.65 +1.2 1,644,042 + SM_b20623 0.65 -0.1 1,644,043 - SM_b20623 0.65 +3.1 1,644,099 + SM_b20623 0.69 -2.3 1,644,261 - SM_b20623 0.82 +1.3 1,644,506 + +0.9 1,644,507 - -0.7 1,644,511 + -1.4 1,644,512 - +1.0 1,644,512 - +0.1 1,645,004 + -0.1 1,645,029 - SM_b20624 0.50 +1.2 1,645,064 + SM_b20624 0.53 -4.5 1,645,064 + SM_b20624 0.53 +0.6 1,645,065 - SM_b20624 0.53 +0.7 1,645,301 + SM_b20624 0.75 +0.6 1,645,302 - SM_b20624 0.75 +0.9 1,645,511 - +1.1 1,645,613 + +0.1 1,645,614 - +0.6 1,645,614 - -1.4 1,645,639 - -1.4 1,645,639 - -0.1 1,645,672 - -0.1 1,645,672 - -2.7 1,645,672 - +1.5 1,646,082 + SM_b20625 0.40 +1.0 1,646,082 + SM_b20625 0.40 +3.3 1,646,083 - SM_b20625 0.40 -3.4 1,646,083 - SM_b20625 0.40 +1.6 1,646,083 - SM_b20625 0.40 +1.9 1,646,083 - SM_b20625 0.40 -0.7 1,646,083 - SM_b20625 0.40 +0.0 1,646,297 - SM_b20625 0.57 -0.2 1,646,298 + SM_b20625 0.58 -0.3 1,646,307 - SM_b20625 0.58 -2.4
Or see this region's nucleotide sequence