Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20619

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20617 and SM_b20618 overlap by 4 nucleotidesSM_b20618 and SM_b20619 are separated by 69 nucleotidesSM_b20619 and SM_b20620 are separated by 42 nucleotides SM_b20617: SM_b20617 - thiazole synthase, at 1,636,955 to 1,637,728 _b20617 SM_b20618: SM_b20618 - thiamine-phosphate pyrophosphorylase, at 1,637,725 to 1,638,330 _b20618 SM_b20619: SM_b20619 - regulatory protein, at 1,638,400 to 1,639,389 _b20619 SM_b20620: SM_b20620 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,639,432 to 1,640,475 _b20620 Position (kb) 1638 1639 1640Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1637.743 kb on + strandat 1637.852 kb on + strand, within SM_b20618at 1637.853 kb on - strand, within SM_b20618at 1637.924 kb on + strand, within SM_b20618at 1638.092 kb on - strand, within SM_b20618at 1638.202 kb on - strand, within SM_b20618at 1638.328 kb on + strandat 1638.485 kb on - strandat 1638.485 kb on - strandat 1638.487 kb on + strandat 1638.488 kb on - strandat 1638.488 kb on - strandat 1638.488 kb on - strandat 1638.489 kb on + strandat 1638.489 kb on + strandat 1638.490 kb on - strandat 1638.490 kb on - strandat 1638.490 kb on - strandat 1638.557 kb on - strand, within SM_b20619at 1638.557 kb on - strand, within SM_b20619at 1638.557 kb on - strand, within SM_b20619at 1638.557 kb on - strand, within SM_b20619at 1638.557 kb on - strand, within SM_b20619at 1638.557 kb on - strand, within SM_b20619at 1638.584 kb on + strand, within SM_b20619at 1638.699 kb on - strand, within SM_b20619at 1638.794 kb on + strand, within SM_b20619at 1638.794 kb on + strand, within SM_b20619at 1638.794 kb on + strand, within SM_b20619at 1638.795 kb on - strand, within SM_b20619at 1638.795 kb on - strand, within SM_b20619at 1638.795 kb on - strand, within SM_b20619at 1638.797 kb on - strand, within SM_b20619at 1638.804 kb on - strand, within SM_b20619at 1638.877 kb on + strand, within SM_b20619at 1638.878 kb on - strand, within SM_b20619at 1638.883 kb on + strand, within SM_b20619at 1639.051 kb on + strand, within SM_b20619at 1639.051 kb on + strand, within SM_b20619at 1639.052 kb on - strand, within SM_b20619at 1639.392 kb on - strandat 1639.429 kb on + strandat 1639.430 kb on - strandat 1639.722 kb on - strand, within SM_b20620at 1639.913 kb on + strand, within SM_b20620at 1639.977 kb on - strand, within SM_b20620at 1639.982 kb on + strand, within SM_b20620at 1639.983 kb on - strand, within SM_b20620at 1639.983 kb on - strand, within SM_b20620at 1640.176 kb on - strand, within SM_b20620at 1640.201 kb on - strand, within SM_b20620at 1640.218 kb on - strand, within SM_b20620at 1640.218 kb on - strand, within SM_b20620at 1640.306 kb on + strand, within SM_b20620at 1640.307 kb on - strand, within SM_b20620at 1640.336 kb on + strand, within SM_b20620

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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1,637,743 + +0.7
1,637,852 + SM_b20618 0.21 +0.9
1,637,853 - SM_b20618 0.21 +1.4
1,637,924 + SM_b20618 0.33 +1.8
1,638,092 - SM_b20618 0.61 -1.9
1,638,202 - SM_b20618 0.79 +0.8
1,638,328 + +0.0
1,638,485 - -1.1
1,638,485 - +1.0
1,638,487 + -1.8
1,638,488 - +1.2
1,638,488 - +1.1
1,638,488 - +1.1
1,638,489 + +0.1
1,638,489 + +2.6
1,638,490 - -0.3
1,638,490 - +0.5
1,638,490 - -0.9
1,638,557 - SM_b20619 0.16 -2.0
1,638,557 - SM_b20619 0.16 +0.6
1,638,557 - SM_b20619 0.16 +0.9
1,638,557 - SM_b20619 0.16 +1.4
1,638,557 - SM_b20619 0.16 +1.9
1,638,557 - SM_b20619 0.16 -1.4
1,638,584 + SM_b20619 0.19 +0.8
1,638,699 - SM_b20619 0.30 +3.8
1,638,794 + SM_b20619 0.40 -0.8
1,638,794 + SM_b20619 0.40 -0.2
1,638,794 + SM_b20619 0.40 +0.9
1,638,795 - SM_b20619 0.40 -0.8
1,638,795 - SM_b20619 0.40 +2.2
1,638,795 - SM_b20619 0.40 +0.8
1,638,797 - SM_b20619 0.40 +4.8
1,638,804 - SM_b20619 0.41 +0.7
1,638,877 + SM_b20619 0.48 +0.4
1,638,878 - SM_b20619 0.48 -0.8
1,638,883 + SM_b20619 0.49 +0.8
1,639,051 + SM_b20619 0.66 -2.2
1,639,051 + SM_b20619 0.66 +0.9
1,639,052 - SM_b20619 0.66 +0.2
1,639,392 - +0.9
1,639,429 + -0.1
1,639,430 - -2.8
1,639,722 - SM_b20620 0.28 +0.3
1,639,913 + SM_b20620 0.46 -1.5
1,639,977 - SM_b20620 0.52 +0.6
1,639,982 + SM_b20620 0.53 -1.3
1,639,983 - SM_b20620 0.53 +4.2
1,639,983 - SM_b20620 0.53 -0.7
1,640,176 - SM_b20620 0.71 -1.8
1,640,201 - SM_b20620 0.74 -0.5
1,640,218 - SM_b20620 0.75 +2.2
1,640,218 - SM_b20620 0.75 -1.1
1,640,306 + SM_b20620 0.84 -1.1
1,640,307 - SM_b20620 0.84 +0.1
1,640,336 + SM_b20620 0.87 +1.6

Or see this region's nucleotide sequence