Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20585 and SM_b20586 are separated by 122 nucleotides SM_b20586 and SM_b20587 are separated by 130 nucleotides
SM_b20585: SM_b20585 - gamma-glutamyltranspeptidase, at 1,599,584 to 1,601,329
_b20585
SM_b20586: SM_b20586 - IclR family transcriptional regulator, at 1,601,452 to 1,602,207
_b20586
SM_b20587: SM_b20587 - CoA-transferase subunit A protein, at 1,602,338 to 1,603,198
_b20587
Position (kb)
1601
1602
1603 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1600.491 kb on - strand, within SM_b20585 at 1600.491 kb on - strand, within SM_b20585 at 1600.499 kb on + strand, within SM_b20585 at 1600.500 kb on - strand, within SM_b20585 at 1600.550 kb on + strand, within SM_b20585 at 1600.550 kb on + strand, within SM_b20585 at 1600.550 kb on + strand, within SM_b20585 at 1600.551 kb on - strand, within SM_b20585 at 1600.551 kb on - strand, within SM_b20585 at 1600.625 kb on + strand, within SM_b20585 at 1600.625 kb on + strand, within SM_b20585 at 1600.767 kb on - strand, within SM_b20585 at 1600.767 kb on - strand, within SM_b20585 at 1600.875 kb on - strand, within SM_b20585 at 1601.126 kb on + strand, within SM_b20585 at 1601.126 kb on + strand, within SM_b20585 at 1601.802 kb on - strand, within SM_b20586 at 1601.871 kb on - strand, within SM_b20586 at 1601.942 kb on + strand, within SM_b20586 at 1601.943 kb on - strand, within SM_b20586 at 1601.943 kb on - strand, within SM_b20586 at 1601.955 kb on + strand, within SM_b20586 at 1601.981 kb on + strand, within SM_b20586 at 1601.982 kb on - strand, within SM_b20586 at 1601.982 kb on - strand, within SM_b20586 at 1601.982 kb on - strand, within SM_b20586 at 1602.211 kb on - strand at 1602.307 kb on + strand at 1602.307 kb on + strand at 1602.370 kb on - strand at 1602.370 kb on - strand at 1602.394 kb on + strand at 1602.432 kb on - strand, within SM_b20587 at 1602.506 kb on + strand, within SM_b20587 at 1602.507 kb on - strand, within SM_b20587 at 1602.668 kb on + strand, within SM_b20587 at 1602.669 kb on - strand, within SM_b20587 at 1602.714 kb on - strand, within SM_b20587 at 1602.733 kb on + strand, within SM_b20587 at 1602.733 kb on + strand, within SM_b20587 at 1602.748 kb on + strand, within SM_b20587 at 1603.034 kb on + strand, within SM_b20587 at 1603.035 kb on - strand, within SM_b20587 at 1603.046 kb on + strand, within SM_b20587 at 1603.046 kb on + strand, within SM_b20587 at 1603.047 kb on - strand, within SM_b20587 at 1603.049 kb on + strand, within SM_b20587 at 1603.050 kb on - strand, within SM_b20587 at 1603.070 kb on + strand, within SM_b20587 at 1603.071 kb on - strand, within SM_b20587 at 1603.071 kb on - strand, within SM_b20587 at 1603.071 kb on - strand, within SM_b20587 at 1603.071 kb on - strand, within SM_b20587
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 1,600,491 - SM_b20585 0.52 -0.2 1,600,491 - SM_b20585 0.52 -0.8 1,600,499 + SM_b20585 0.52 +0.9 1,600,500 - SM_b20585 0.52 +1.3 1,600,550 + SM_b20585 0.55 -1.4 1,600,550 + SM_b20585 0.55 -0.1 1,600,550 + SM_b20585 0.55 -3.2 1,600,551 - SM_b20585 0.55 -1.4 1,600,551 - SM_b20585 0.55 -1.9 1,600,625 + SM_b20585 0.60 -0.2 1,600,625 + SM_b20585 0.60 +0.1 1,600,767 - SM_b20585 0.68 -0.2 1,600,767 - SM_b20585 0.68 -2.7 1,600,875 - SM_b20585 0.74 +0.7 1,601,126 + SM_b20585 0.88 -0.5 1,601,126 + SM_b20585 0.88 -2.4 1,601,802 - SM_b20586 0.46 +1.2 1,601,871 - SM_b20586 0.55 +0.5 1,601,942 + SM_b20586 0.65 +1.6 1,601,943 - SM_b20586 0.65 -2.1 1,601,943 - SM_b20586 0.65 -1.7 1,601,955 + SM_b20586 0.67 -0.6 1,601,981 + SM_b20586 0.70 -3.0 1,601,982 - SM_b20586 0.70 +3.1 1,601,982 - SM_b20586 0.70 -1.5 1,601,982 - SM_b20586 0.70 +1.8 1,602,211 - -1.3 1,602,307 + +0.4 1,602,307 + -0.9 1,602,370 - +0.2 1,602,370 - +0.2 1,602,394 + -2.3 1,602,432 - SM_b20587 0.11 -0.9 1,602,506 + SM_b20587 0.20 -0.5 1,602,507 - SM_b20587 0.20 +0.2 1,602,668 + SM_b20587 0.38 +1.7 1,602,669 - SM_b20587 0.38 -0.0 1,602,714 - SM_b20587 0.44 -2.4 1,602,733 + SM_b20587 0.46 -0.4 1,602,733 + SM_b20587 0.46 +1.4 1,602,748 + SM_b20587 0.48 +0.7 1,603,034 + SM_b20587 0.81 +0.7 1,603,035 - SM_b20587 0.81 -0.5 1,603,046 + SM_b20587 0.82 -1.2 1,603,046 + SM_b20587 0.82 -0.2 1,603,047 - SM_b20587 0.82 -1.9 1,603,049 + SM_b20587 0.83 -1.8 1,603,050 - SM_b20587 0.83 +0.7 1,603,070 + SM_b20587 0.85 -2.9 1,603,071 - SM_b20587 0.85 -0.5 1,603,071 - SM_b20587 0.85 -1.5 1,603,071 - SM_b20587 0.85 -1.1 1,603,071 - SM_b20587 0.85 -3.7
Or see this region's nucleotide sequence