Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20560 and SM_b20561 are separated by 693 nucleotides SM_b20561 and SM_b20562 are separated by 130 nucleotides
SM_b20560: SM_b20560 - hypothetical protein, at 584,682 to 584,903
_b20560
SM_b20561: SM_b20561 - hypothetical protein, at 585,597 to 586,055
_b20561
SM_b20562: SM_b20562 - hypothetical protein, at 586,186 to 587,100
_b20562
Position (kb) 585
586
587 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 584.620 kb on + strand at 584.621 kb on - strand at 584.680 kb on + strand at 584.886 kb on + strand at 584.887 kb on - strand at 584.899 kb on + strand at 584.899 kb on + strand at 584.899 kb on + strand at 584.899 kb on + strand at 584.899 kb on + strand at 584.900 kb on - strand at 584.900 kb on - strand at 584.900 kb on - strand at 584.900 kb on - strand at 585.035 kb on + strand at 585.120 kb on + strand at 585.120 kb on + strand at 585.121 kb on - strand at 585.203 kb on - strand at 585.203 kb on - strand at 585.387 kb on + strand at 585.387 kb on + strand at 585.497 kb on - strand at 585.557 kb on - strand at 585.557 kb on - strand at 585.557 kb on - strand at 585.599 kb on - strand at 585.685 kb on + strand, within SM_b20561 at 585.685 kb on + strand, within SM_b20561 at 585.685 kb on + strand, within SM_b20561 at 585.685 kb on + strand, within SM_b20561 at 585.686 kb on - strand, within SM_b20561 at 585.686 kb on - strand, within SM_b20561 at 585.686 kb on - strand, within SM_b20561 at 585.686 kb on - strand, within SM_b20561 at 585.686 kb on - strand, within SM_b20561 at 585.686 kb on - strand, within SM_b20561 at 585.686 kb on - strand, within SM_b20561 at 585.823 kb on - strand, within SM_b20561 at 585.930 kb on + strand, within SM_b20561 at 585.930 kb on + strand, within SM_b20561 at 586.006 kb on + strand, within SM_b20561 at 586.006 kb on + strand, within SM_b20561 at 586.007 kb on - strand, within SM_b20561 at 586.007 kb on - strand, within SM_b20561 at 586.057 kb on + strand at 586.058 kb on - strand at 586.058 kb on - strand at 586.102 kb on + strand at 586.107 kb on + strand at 586.107 kb on + strand at 586.108 kb on - strand at 586.119 kb on + strand at 586.119 kb on + strand at 586.120 kb on - strand at 586.120 kb on - strand at 586.122 kb on - strand at 586.179 kb on + strand at 586.179 kb on + strand at 586.179 kb on + strand at 586.188 kb on - strand at 586.250 kb on + strand at 586.251 kb on - strand at 586.256 kb on + strand at 586.256 kb on + strand at 586.257 kb on - strand at 586.257 kb on - strand at 586.372 kb on - strand, within SM_b20562 at 586.372 kb on - strand, within SM_b20562 at 586.457 kb on + strand, within SM_b20562 at 586.457 kb on + strand, within SM_b20562 at 586.457 kb on + strand, within SM_b20562 at 586.458 kb on - strand, within SM_b20562 at 586.458 kb on - strand, within SM_b20562 at 586.612 kb on + strand, within SM_b20562 at 586.612 kb on + strand, within SM_b20562 at 586.612 kb on + strand, within SM_b20562 at 586.613 kb on - strand, within SM_b20562 at 586.613 kb on - strand, within SM_b20562 at 586.613 kb on - strand, within SM_b20562 at 586.613 kb on - strand, within SM_b20562 at 586.637 kb on + strand, within SM_b20562 at 586.638 kb on - strand, within SM_b20562 at 586.643 kb on + strand, within SM_b20562 at 586.644 kb on - strand, within SM_b20562 at 586.722 kb on + strand, within SM_b20562 at 586.759 kb on + strand, within SM_b20562 at 586.778 kb on + strand, within SM_b20562 at 586.779 kb on - strand, within SM_b20562 at 586.838 kb on + strand, within SM_b20562 at 586.838 kb on + strand, within SM_b20562 at 586.838 kb on + strand, within SM_b20562 at 586.839 kb on - strand, within SM_b20562 at 586.839 kb on - strand, within SM_b20562 at 586.881 kb on + strand, within SM_b20562 at 586.882 kb on - strand, within SM_b20562 at 586.889 kb on + strand, within SM_b20562 at 586.942 kb on + strand, within SM_b20562 at 586.943 kb on - strand, within SM_b20562
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 584,620 + +0.5 584,621 - +0.7 584,680 + -2.6 584,886 + +1.3 584,887 - +0.8 584,899 + +2.1 584,899 + -0.7 584,899 + -0.2 584,899 + +0.5 584,899 + -0.8 584,900 - +2.1 584,900 - -0.6 584,900 - -0.7 584,900 - +2.9 585,035 + +0.2 585,120 + +0.9 585,120 + +0.9 585,121 - +0.5 585,203 - +1.6 585,203 - +1.4 585,387 + -1.8 585,387 + +1.6 585,497 - -3.3 585,557 - -1.7 585,557 - +0.2 585,557 - +0.7 585,599 - +0.7 585,685 + SM_b20561 0.19 +0.6 585,685 + SM_b20561 0.19 +4.2 585,685 + SM_b20561 0.19 +0.7 585,685 + SM_b20561 0.19 -1.8 585,686 - SM_b20561 0.19 -0.8 585,686 - SM_b20561 0.19 -0.7 585,686 - SM_b20561 0.19 -1.7 585,686 - SM_b20561 0.19 -2.3 585,686 - SM_b20561 0.19 -1.9 585,686 - SM_b20561 0.19 +0.9 585,686 - SM_b20561 0.19 +0.7 585,823 - SM_b20561 0.49 -3.0 585,930 + SM_b20561 0.73 +0.4 585,930 + SM_b20561 0.73 +2.9 586,006 + SM_b20561 0.89 -1.8 586,006 + SM_b20561 0.89 -0.3 586,007 - SM_b20561 0.89 +2.5 586,007 - SM_b20561 0.89 +1.3 586,057 + +1.1 586,058 - +0.3 586,058 - +0.2 586,102 + -0.1 586,107 + +0.6 586,107 + -0.1 586,108 - +0.7 586,119 + +0.7 586,119 + +1.6 586,120 - +1.2 586,120 - +3.0 586,122 - +0.2 586,179 + -1.0 586,179 + +0.7 586,179 + -0.5 586,188 - -1.2 586,250 + -1.1 586,251 - -1.5 586,256 + +2.5 586,256 + +0.2 586,257 - +1.7 586,257 - -1.7 586,372 - SM_b20562 0.20 -0.1 586,372 - SM_b20562 0.20 -3.9 586,457 + SM_b20562 0.30 -0.9 586,457 + SM_b20562 0.30 +1.4 586,457 + SM_b20562 0.30 +1.0 586,458 - SM_b20562 0.30 +0.1 586,458 - SM_b20562 0.30 +0.7 586,612 + SM_b20562 0.47 -0.8 586,612 + SM_b20562 0.47 +0.5 586,612 + SM_b20562 0.47 +0.5 586,613 - SM_b20562 0.47 -0.6 586,613 - SM_b20562 0.47 +0.9 586,613 - SM_b20562 0.47 -0.7 586,613 - SM_b20562 0.47 -1.7 586,637 + SM_b20562 0.49 +0.3 586,638 - SM_b20562 0.49 -1.1 586,643 + SM_b20562 0.50 -0.2 586,644 - SM_b20562 0.50 +0.9 586,722 + SM_b20562 0.59 -0.4 586,759 + SM_b20562 0.63 -0.7 586,778 + SM_b20562 0.65 -1.5 586,779 - SM_b20562 0.65 +0.3 586,838 + SM_b20562 0.71 +0.9 586,838 + SM_b20562 0.71 +0.8 586,838 + SM_b20562 0.71 -2.7 586,839 - SM_b20562 0.71 +0.6 586,839 - SM_b20562 0.71 +0.6 586,881 + SM_b20562 0.76 -0.6 586,882 - SM_b20562 0.76 -2.6 586,889 + SM_b20562 0.77 -0.1 586,942 + SM_b20562 0.83 -2.4 586,943 - SM_b20562 0.83 -1.7
Or see this region's nucleotide sequence