Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20497

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20496 and SM_b20497 are separated by 8 nucleotidesSM_b20497 and SM_b20498 are separated by 30 nucleotidesSM_b20498 and SM_b20499 are separated by 66 nucleotides SM_b20496: SM_b20496 - GMC oxidoreductase, at 515,354 to 516,964 _b20496 SM_b20497: SM_b20497 - L-xylulose kinase, at 516,973 to 518,502 _b20497 SM_b20498: SM_b20498 - hypothetical protein, at 518,533 to 519,375 _b20498 SM_b20499: SM_b20499 - glycerol-3-phosphate dehydrogenase, at 519,442 to 521,175 _b20499 Position (kb) 516 517 518 519Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 516.010 kb on - strand, within SM_b20496at 516.010 kb on - strand, within SM_b20496at 516.010 kb on - strand, within SM_b20496at 516.010 kb on - strand, within SM_b20496at 516.010 kb on - strand, within SM_b20496at 516.156 kb on - strand, within SM_b20496at 516.386 kb on + strand, within SM_b20496at 516.636 kb on + strandat 516.659 kb on - strand, within SM_b20496at 516.659 kb on - strand, within SM_b20496at 516.659 kb on - strand, within SM_b20496at 516.659 kb on - strand, within SM_b20496at 516.660 kb on + strand, within SM_b20496at 516.660 kb on + strand, within SM_b20496at 516.660 kb on + strand, within SM_b20496at 516.661 kb on - strand, within SM_b20496at 516.661 kb on - strand, within SM_b20496at 516.661 kb on - strand, within SM_b20496at 516.661 kb on - strand, within SM_b20496at 516.790 kb on - strand, within SM_b20496at 517.055 kb on + strandat 517.056 kb on - strandat 517.056 kb on - strandat 517.065 kb on - strandat 517.069 kb on - strandat 517.069 kb on - strandat 517.076 kb on + strandat 517.076 kb on + strandat 517.077 kb on - strandat 517.077 kb on - strandat 517.267 kb on + strand, within SM_b20497at 517.421 kb on + strand, within SM_b20497at 517.421 kb on + strand, within SM_b20497at 517.422 kb on - strand, within SM_b20497at 517.422 kb on - strand, within SM_b20497at 517.422 kb on - strand, within SM_b20497at 517.466 kb on + strand, within SM_b20497at 517.475 kb on + strand, within SM_b20497at 517.475 kb on + strand, within SM_b20497at 517.475 kb on + strand, within SM_b20497at 517.475 kb on + strand, within SM_b20497at 517.475 kb on + strand, within SM_b20497at 517.475 kb on + strand, within SM_b20497at 517.476 kb on - strand, within SM_b20497at 517.476 kb on - strand, within SM_b20497at 517.628 kb on + strand, within SM_b20497at 518.050 kb on - strand, within SM_b20497at 518.138 kb on + strand, within SM_b20497at 518.246 kb on + strand, within SM_b20497at 518.246 kb on + strand, within SM_b20497at 518.247 kb on - strand, within SM_b20497at 518.247 kb on - strand, within SM_b20497at 518.316 kb on + strand, within SM_b20497at 518.316 kb on + strand, within SM_b20497at 518.317 kb on - strand, within SM_b20497at 518.317 kb on - strand, within SM_b20497at 518.488 kb on + strandat 518.492 kb on + strandat 518.492 kb on + strandat 518.492 kb on + strandat 518.493 kb on - strandat 518.493 kb on - strandat 518.493 kb on - strandat 518.547 kb on - strandat 518.633 kb on + strand, within SM_b20498at 518.633 kb on + strand, within SM_b20498at 518.648 kb on + strand, within SM_b20498at 518.648 kb on + strand, within SM_b20498at 518.648 kb on + strand, within SM_b20498at 518.876 kb on + strand, within SM_b20498at 518.876 kb on + strand, within SM_b20498at 518.877 kb on - strand, within SM_b20498at 518.918 kb on - strand, within SM_b20498at 518.936 kb on + strand, within SM_b20498at 518.936 kb on + strand, within SM_b20498at 518.936 kb on + strand, within SM_b20498at 518.936 kb on + strand, within SM_b20498at 519.119 kb on + strand, within SM_b20498at 519.120 kb on - strand, within SM_b20498at 519.363 kb on + strandat 519.364 kb on - strandat 519.377 kb on + strandat 519.378 kb on + strandat 519.379 kb on - strandat 519.379 kb on - strandat 519.462 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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516,010 - SM_b20496 0.41 -3.3
516,010 - SM_b20496 0.41 +0.5
516,010 - SM_b20496 0.41 +1.9
516,010 - SM_b20496 0.41 -1.2
516,010 - SM_b20496 0.41 +0.3
516,156 - SM_b20496 0.50 -1.3
516,386 + SM_b20496 0.64 -2.7
516,636 + +0.9
516,659 - SM_b20496 0.81 -1.0
516,659 - SM_b20496 0.81 +1.2
516,659 - SM_b20496 0.81 +2.1
516,659 - SM_b20496 0.81 -3.9
516,660 + SM_b20496 0.81 +0.8
516,660 + SM_b20496 0.81 +2.5
516,660 + SM_b20496 0.81 -4.2
516,661 - SM_b20496 0.81 -1.8
516,661 - SM_b20496 0.81 +4.4
516,661 - SM_b20496 0.81 -2.7
516,661 - SM_b20496 0.81 -0.7
516,790 - SM_b20496 0.89 +1.9
517,055 + -0.7
517,056 - -0.1
517,056 - -0.0
517,065 - +1.0
517,069 - +0.3
517,069 - -0.5
517,076 + +0.3
517,076 + +0.1
517,077 - +0.2
517,077 - +0.7
517,267 + SM_b20497 0.19 -0.7
517,421 + SM_b20497 0.29 +0.1
517,421 + SM_b20497 0.29 +0.4
517,422 - SM_b20497 0.29 +0.8
517,422 - SM_b20497 0.29 -1.5
517,422 - SM_b20497 0.29 -4.6
517,466 + SM_b20497 0.32 -0.7
517,475 + SM_b20497 0.33 -4.3
517,475 + SM_b20497 0.33 +1.0
517,475 + SM_b20497 0.33 +0.7
517,475 + SM_b20497 0.33 +1.8
517,475 + SM_b20497 0.33 +1.7
517,475 + SM_b20497 0.33 -0.4
517,476 - SM_b20497 0.33 +1.3
517,476 - SM_b20497 0.33 -0.0
517,628 + SM_b20497 0.43 -0.0
518,050 - SM_b20497 0.70 +1.7
518,138 + SM_b20497 0.76 +0.1
518,246 + SM_b20497 0.83 +0.8
518,246 + SM_b20497 0.83 +0.9
518,247 - SM_b20497 0.83 +0.7
518,247 - SM_b20497 0.83 +1.9
518,316 + SM_b20497 0.88 -0.1
518,316 + SM_b20497 0.88 -2.4
518,317 - SM_b20497 0.88 +0.5
518,317 - SM_b20497 0.88 -1.1
518,488 + -1.7
518,492 + +0.1
518,492 + +0.5
518,492 + +0.1
518,493 - +0.6
518,493 - +3.7
518,493 - +1.3
518,547 - -2.6
518,633 + SM_b20498 0.12 +0.6
518,633 + SM_b20498 0.12 -1.6
518,648 + SM_b20498 0.14 -1.3
518,648 + SM_b20498 0.14 +0.9
518,648 + SM_b20498 0.14 -1.7
518,876 + SM_b20498 0.41 -0.1
518,876 + SM_b20498 0.41 -3.6
518,877 - SM_b20498 0.41 +0.2
518,918 - SM_b20498 0.46 -4.6
518,936 + SM_b20498 0.48 +0.1
518,936 + SM_b20498 0.48 +0.5
518,936 + SM_b20498 0.48 -0.8
518,936 + SM_b20498 0.48 -2.1
519,119 + SM_b20498 0.70 -1.4
519,120 - SM_b20498 0.70 +0.4
519,363 + -0.4
519,364 - -1.5
519,377 + +0.1
519,378 + -0.6
519,379 - +0.9
519,379 - -0.2
519,462 + -0.4

Or see this region's nucleotide sequence