Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20483 and SM_b20484 are separated by 273 nucleotides SM_b20484 and SM_b20485 are separated by 105 nucleotides
SM_b20483: SM_b20483 - catabolite repressor protein, at 498,491 to 499,561
_b20483
SM_b20484: SM_b20484 - sugar ABC transporter substrate-binding protein, at 499,835 to 500,827
_b20484
SM_b20485: SM_b20485 - sugar ABC transporter ATP-binding protein, at 500,933 to 502,462
_b20485
Position (kb) 499
500
501 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 498.878 kb on + strand, within SM_b20483 at 498.878 kb on + strand, within SM_b20483 at 498.879 kb on - strand, within SM_b20483 at 498.936 kb on - strand, within SM_b20483 at 498.936 kb on - strand, within SM_b20483 at 498.978 kb on + strand, within SM_b20483 at 499.108 kb on + strand, within SM_b20483 at 499.109 kb on - strand at 499.109 kb on - strand, within SM_b20483 at 499.115 kb on + strand, within SM_b20483 at 499.115 kb on + strand, within SM_b20483 at 499.116 kb on - strand, within SM_b20483 at 499.172 kb on - strand, within SM_b20483 at 499.191 kb on + strand, within SM_b20483 at 499.192 kb on - strand, within SM_b20483 at 499.274 kb on - strand, within SM_b20483 at 499.274 kb on - strand, within SM_b20483 at 499.328 kb on + strand, within SM_b20483 at 499.370 kb on + strand, within SM_b20483 at 499.399 kb on - strand, within SM_b20483 at 499.476 kb on - strand at 499.527 kb on + strand at 499.527 kb on + strand at 499.528 kb on - strand at 499.528 kb on - strand at 499.643 kb on + strand at 499.892 kb on + strand at 499.892 kb on + strand at 499.950 kb on + strand, within SM_b20484 at 500.106 kb on + strand, within SM_b20484 at 500.291 kb on + strand, within SM_b20484 at 500.292 kb on - strand, within SM_b20484 at 500.357 kb on + strand, within SM_b20484 at 500.358 kb on - strand, within SM_b20484 at 500.755 kb on + strand at 501.137 kb on + strand, within SM_b20485 at 501.138 kb on - strand, within SM_b20485 at 501.183 kb on - strand, within SM_b20485 at 501.183 kb on - strand, within SM_b20485 at 501.190 kb on + strand, within SM_b20485 at 501.190 kb on + strand, within SM_b20485 at 501.191 kb on - strand, within SM_b20485 at 501.324 kb on - strand, within SM_b20485 at 501.405 kb on - strand, within SM_b20485 at 501.405 kb on - strand, within SM_b20485 at 501.648 kb on - strand, within SM_b20485 at 501.794 kb on - strand, within SM_b20485 at 501.794 kb on - strand, within SM_b20485
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 498,878 + SM_b20483 0.36 -1.4 498,878 + SM_b20483 0.36 +1.0 498,879 - SM_b20483 0.36 -1.7 498,936 - SM_b20483 0.42 -1.3 498,936 - SM_b20483 0.42 +0.6 498,978 + SM_b20483 0.45 -2.3 499,108 + SM_b20483 0.58 -1.1 499,109 - +0.9 499,109 - SM_b20483 0.58 +0.9 499,115 + SM_b20483 0.58 -3.0 499,115 + SM_b20483 0.58 +0.4 499,116 - SM_b20483 0.58 -1.9 499,172 - SM_b20483 0.64 -0.1 499,191 + SM_b20483 0.65 +0.2 499,192 - SM_b20483 0.65 +2.0 499,274 - SM_b20483 0.73 +0.3 499,274 - SM_b20483 0.73 +1.1 499,328 + SM_b20483 0.78 +0.1 499,370 + SM_b20483 0.82 -0.8 499,399 - SM_b20483 0.85 -2.4 499,476 - +1.4 499,527 + +2.0 499,527 + -1.6 499,528 - -1.4 499,528 - -1.7 499,643 + -0.7 499,892 + -3.8 499,892 + +0.9 499,950 + SM_b20484 0.12 -1.2 500,106 + SM_b20484 0.27 +0.9 500,291 + SM_b20484 0.46 -0.3 500,292 - SM_b20484 0.46 -0.8 500,357 + SM_b20484 0.53 +0.5 500,358 - SM_b20484 0.53 +0.4 500,755 + +0.2 501,137 + SM_b20485 0.13 +0.2 501,138 - SM_b20485 0.13 +0.1 501,183 - SM_b20485 0.16 -0.2 501,183 - SM_b20485 0.16 -1.3 501,190 + SM_b20485 0.17 +1.6 501,190 + SM_b20485 0.17 +0.2 501,191 - SM_b20485 0.17 +0.2 501,324 - SM_b20485 0.26 +0.1 501,405 - SM_b20485 0.31 -1.6 501,405 - SM_b20485 0.31 -0.6 501,648 - SM_b20485 0.47 +0.3 501,794 - SM_b20485 0.56 -2.9 501,794 - SM_b20485 0.56 +1.1
Or see this region's nucleotide sequence