Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20457 and SM_b20458 are separated by 359 nucleotides SM_b20458 and SM_b20459 overlap by 1 nucleotides SM_b20459 and SM_b20460 overlap by 4 nucleotides
SM_b20457: SM_b20457 - transcriptional regulator transcription regulator protein, at 468,904 to 470,052
_b20457
SM_b20458: SM_b20458 - dTDP-glucose 4,6-dehydratase, at 470,412 to 471,458
_b20458
SM_b20459: SM_b20459 - UDP-glucose 4-epimerase, at 471,458 to 472,444
_b20459
SM_b20460: SM_b20460 - cellulose synthase, at 472,441 to 474,306
_b20460
Position (kb) 470
471
472 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 469.440 kb on + strand, within SM_b20457 at 469.440 kb on + strand, within SM_b20457 at 469.440 kb on + strand, within SM_b20457 at 469.441 kb on - strand, within SM_b20457 at 469.442 kb on + strand, within SM_b20457 at 469.442 kb on + strand, within SM_b20457 at 469.443 kb on - strand, within SM_b20457 at 469.529 kb on + strand, within SM_b20457 at 469.529 kb on + strand, within SM_b20457 at 469.529 kb on + strand, within SM_b20457 at 469.577 kb on + strand, within SM_b20457 at 469.727 kb on + strand, within SM_b20457 at 469.731 kb on + strand, within SM_b20457 at 469.731 kb on + strand, within SM_b20457 at 469.731 kb on + strand, within SM_b20457 at 469.732 kb on - strand, within SM_b20457 at 469.732 kb on - strand, within SM_b20457 at 469.732 kb on - strand, within SM_b20457 at 469.732 kb on - strand, within SM_b20457 at 469.732 kb on - strand, within SM_b20457 at 469.732 kb on - strand, within SM_b20457 at 469.854 kb on + strand, within SM_b20457 at 469.855 kb on - strand, within SM_b20457 at 469.855 kb on - strand, within SM_b20457 at 469.872 kb on + strand, within SM_b20457 at 469.919 kb on - strand, within SM_b20457 at 469.992 kb on + strand at 469.992 kb on + strand at 469.993 kb on - strand at 470.096 kb on + strand at 470.096 kb on + strand at 470.204 kb on + strand at 470.204 kb on + strand at 470.205 kb on - strand at 470.205 kb on - strand at 470.206 kb on + strand at 470.207 kb on - strand at 470.249 kb on - strand at 470.286 kb on - strand at 470.588 kb on + strand, within SM_b20458 at 470.589 kb on - strand, within SM_b20458 at 470.701 kb on - strand, within SM_b20458 at 470.701 kb on - strand, within SM_b20458 at 470.701 kb on - strand, within SM_b20458 at 470.703 kb on - strand, within SM_b20458 at 470.733 kb on + strand, within SM_b20458 at 470.734 kb on - strand, within SM_b20458 at 470.884 kb on - strand, within SM_b20458 at 470.884 kb on - strand, within SM_b20458 at 470.884 kb on - strand, within SM_b20458 at 470.884 kb on - strand, within SM_b20458 at 470.923 kb on - strand, within SM_b20458 at 470.923 kb on - strand, within SM_b20458 at 470.923 kb on - strand, within SM_b20458 at 471.015 kb on + strand, within SM_b20458 at 471.089 kb on + strand, within SM_b20458 at 471.089 kb on + strand, within SM_b20458 at 471.099 kb on + strand, within SM_b20458 at 471.099 kb on + strand, within SM_b20458 at 471.100 kb on - strand, within SM_b20458 at 471.100 kb on - strand, within SM_b20458 at 471.100 kb on - strand, within SM_b20458 at 471.405 kb on + strand at 471.473 kb on - strand at 471.473 kb on - strand at 471.498 kb on - strand at 471.554 kb on + strand at 471.555 kb on - strand at 471.616 kb on + strand, within SM_b20459 at 471.617 kb on - strand, within SM_b20459 at 471.617 kb on - strand, within SM_b20459 at 471.732 kb on - strand, within SM_b20459 at 471.824 kb on + strand at 471.824 kb on + strand, within SM_b20459 at 471.824 kb on + strand, within SM_b20459 at 471.824 kb on + strand, within SM_b20459 at 471.824 kb on + strand, within SM_b20459 at 471.824 kb on + strand, within SM_b20459 at 471.824 kb on + strand, within SM_b20459 at 471.825 kb on - strand, within SM_b20459 at 471.825 kb on - strand, within SM_b20459 at 471.825 kb on - strand, within SM_b20459 at 471.884 kb on + strand, within SM_b20459 at 471.884 kb on + strand, within SM_b20459 at 471.890 kb on - strand, within SM_b20459 at 471.890 kb on - strand, within SM_b20459 at 471.890 kb on - strand, within SM_b20459 at 471.890 kb on - strand, within SM_b20459 at 471.926 kb on + strand, within SM_b20459 at 471.927 kb on - strand, within SM_b20459 at 471.965 kb on + strand, within SM_b20459 at 472.123 kb on - strand, within SM_b20459 at 472.130 kb on + strand, within SM_b20459 at 472.131 kb on - strand, within SM_b20459 at 472.131 kb on - strand, within SM_b20459 at 472.132 kb on + strand, within SM_b20459 at 472.133 kb on - strand, within SM_b20459 at 472.133 kb on - strand at 472.133 kb on - strand, within SM_b20459 at 472.239 kb on + strand, within SM_b20459 at 472.239 kb on + strand, within SM_b20459 at 472.270 kb on + strand, within SM_b20459
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 469,440 + SM_b20457 0.47 -2.4 469,440 + SM_b20457 0.47 -1.9 469,440 + SM_b20457 0.47 -0.1 469,441 - SM_b20457 0.47 -0.3 469,442 + SM_b20457 0.47 -3.3 469,442 + SM_b20457 0.47 +0.4 469,443 - SM_b20457 0.47 +2.4 469,529 + SM_b20457 0.54 -1.4 469,529 + SM_b20457 0.54 -0.4 469,529 + SM_b20457 0.54 -0.2 469,577 + SM_b20457 0.59 -0.5 469,727 + SM_b20457 0.72 -1.7 469,731 + SM_b20457 0.72 +0.5 469,731 + SM_b20457 0.72 +1.5 469,731 + SM_b20457 0.72 -2.9 469,732 - SM_b20457 0.72 +2.3 469,732 - SM_b20457 0.72 -0.2 469,732 - SM_b20457 0.72 -0.5 469,732 - SM_b20457 0.72 -1.6 469,732 - SM_b20457 0.72 -2.4 469,732 - SM_b20457 0.72 -3.4 469,854 + SM_b20457 0.83 -0.7 469,855 - SM_b20457 0.83 -0.9 469,855 - SM_b20457 0.83 +0.1 469,872 + SM_b20457 0.84 -0.5 469,919 - SM_b20457 0.88 -2.1 469,992 + -0.5 469,992 + -0.7 469,993 - +0.3 470,096 + -2.4 470,096 + -2.1 470,204 + +0.2 470,204 + +1.9 470,205 - +2.4 470,205 - -0.2 470,206 + -0.1 470,207 - +2.1 470,249 - -1.7 470,286 - -0.3 470,588 + SM_b20458 0.17 +0.4 470,589 - SM_b20458 0.17 -1.1 470,701 - SM_b20458 0.28 -1.7 470,701 - SM_b20458 0.28 +0.4 470,701 - SM_b20458 0.28 -0.7 470,703 - SM_b20458 0.28 +0.2 470,733 + SM_b20458 0.31 +0.4 470,734 - SM_b20458 0.31 -2.1 470,884 - SM_b20458 0.45 +1.3 470,884 - SM_b20458 0.45 -1.1 470,884 - SM_b20458 0.45 -3.3 470,884 - SM_b20458 0.45 +3.5 470,923 - SM_b20458 0.49 +3.1 470,923 - SM_b20458 0.49 +5.8 470,923 - SM_b20458 0.49 +2.4 471,015 + SM_b20458 0.58 -1.1 471,089 + SM_b20458 0.65 +0.4 471,089 + SM_b20458 0.65 -0.5 471,099 + SM_b20458 0.66 -2.3 471,099 + SM_b20458 0.66 +0.5 471,100 - SM_b20458 0.66 +1.1 471,100 - SM_b20458 0.66 +0.9 471,100 - SM_b20458 0.66 +0.3 471,405 + -0.4 471,473 - -1.5 471,473 - +0.9 471,498 - +1.2 471,554 + -0.2 471,555 - -0.6 471,616 + SM_b20459 0.16 +3.2 471,617 - SM_b20459 0.16 -2.4 471,617 - SM_b20459 0.16 -0.5 471,732 - SM_b20459 0.28 +1.0 471,824 + +0.9 471,824 + SM_b20459 0.37 -3.1 471,824 + SM_b20459 0.37 +0.7 471,824 + SM_b20459 0.37 -0.7 471,824 + SM_b20459 0.37 +0.0 471,824 + SM_b20459 0.37 -2.1 471,824 + SM_b20459 0.37 +0.6 471,825 - SM_b20459 0.37 +0.2 471,825 - SM_b20459 0.37 +0.2 471,825 - SM_b20459 0.37 -0.7 471,884 + SM_b20459 0.43 +0.3 471,884 + SM_b20459 0.43 +0.9 471,890 - SM_b20459 0.44 +0.5 471,890 - SM_b20459 0.44 +0.0 471,890 - SM_b20459 0.44 -0.5 471,890 - SM_b20459 0.44 +4.1 471,926 + SM_b20459 0.47 -2.0 471,927 - SM_b20459 0.48 -0.9 471,965 + SM_b20459 0.51 +1.2 472,123 - SM_b20459 0.67 -0.7 472,130 + SM_b20459 0.68 +0.9 472,131 - SM_b20459 0.68 -1.2 472,131 - SM_b20459 0.68 +0.0 472,132 + SM_b20459 0.68 +0.9 472,133 - SM_b20459 0.68 +0.8 472,133 - +0.9 472,133 - SM_b20459 0.68 -2.4 472,239 + SM_b20459 0.79 -0.3 472,239 + SM_b20459 0.79 +2.7 472,270 + SM_b20459 0.82 -0.7
Or see this region's nucleotide sequence