Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20445 and SM_b20446 are separated by 9 nucleotides SM_b20446 and SM_b20447 are separated by 275 nucleotides
SM_b20445: SM_b20445 - alcohol dehydrogenase, at 456,313 to 457,371
_b20445
SM_b20446: SM_b20446 - mannonate dehydratase, at 457,381 to 458,589
_b20446
SM_b20447: SM_b20447 - hypothetical protein, at 458,865 to 460,559
_b20447
Position (kb) 457
458
459 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 456.461 kb on - strand, within SM_b20445 at 456.461 kb on - strand, within SM_b20445 at 456.461 kb on - strand, within SM_b20445 at 456.463 kb on + strand, within SM_b20445 at 456.509 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.848 kb on + strand, within SM_b20445 at 456.849 kb on - strand, within SM_b20445 at 457.021 kb on + strand, within SM_b20445 at 457.021 kb on + strand, within SM_b20445 at 457.082 kb on + strand, within SM_b20445 at 457.149 kb on + strand, within SM_b20445 at 457.150 kb on - strand, within SM_b20445 at 457.389 kb on + strand at 457.389 kb on + strand at 457.389 kb on + strand at 457.389 kb on + strand at 457.390 kb on - strand at 457.390 kb on - strand at 457.390 kb on - strand at 457.390 kb on - strand at 457.685 kb on - strand, within SM_b20446 at 457.829 kb on - strand, within SM_b20446 at 457.909 kb on - strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.979 kb on - strand, within SM_b20446 at 457.979 kb on - strand, within SM_b20446 at 458.140 kb on + strand, within SM_b20446 at 458.140 kb on + strand, within SM_b20446 at 458.300 kb on + strand, within SM_b20446 at 458.300 kb on + strand, within SM_b20446 at 458.301 kb on - strand, within SM_b20446 at 458.301 kb on - strand, within SM_b20446 at 458.563 kb on + strand at 458.564 kb on - strand at 458.564 kb on - strand at 458.564 kb on - strand at 458.602 kb on + strand at 458.616 kb on - strand at 458.677 kb on - strand at 458.805 kb on + strand at 458.815 kb on + strand at 458.950 kb on - strand at 459.042 kb on + strand, within SM_b20447 at 459.042 kb on + strand, within SM_b20447 at 459.043 kb on - strand, within SM_b20447 at 459.213 kb on + strand, within SM_b20447 at 459.259 kb on + strand, within SM_b20447 at 459.259 kb on + strand, within SM_b20447 at 459.260 kb on - strand, within SM_b20447 at 459.490 kb on - strand, within SM_b20447 at 459.497 kb on - strand, within SM_b20447
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 456,461 - SM_b20445 0.14 -0.5 456,461 - SM_b20445 0.14 -0.7 456,461 - SM_b20445 0.14 -0.1 456,463 + SM_b20445 0.14 -0.2 456,509 + SM_b20445 0.19 +2.0 456,702 + SM_b20445 0.37 +1.7 456,702 + SM_b20445 0.37 -1.9 456,702 + SM_b20445 0.37 -3.2 456,702 + SM_b20445 0.37 -2.1 456,702 + SM_b20445 0.37 -0.6 456,848 + SM_b20445 0.51 -3.7 456,849 - SM_b20445 0.51 -0.2 457,021 + SM_b20445 0.67 -0.7 457,021 + SM_b20445 0.67 +0.9 457,082 + SM_b20445 0.73 +1.5 457,149 + SM_b20445 0.79 -0.3 457,150 - SM_b20445 0.79 +0.7 457,389 + +2.0 457,389 + -0.7 457,389 + +1.2 457,389 + -0.1 457,390 - +0.2 457,390 - +0.8 457,390 - +0.5 457,390 - -0.1 457,685 - SM_b20446 0.25 +1.6 457,829 - SM_b20446 0.37 -2.5 457,909 - SM_b20446 0.44 -0.4 457,978 + SM_b20446 0.49 +0.8 457,978 + SM_b20446 0.49 -4.0 457,978 + SM_b20446 0.49 -1.7 457,978 + SM_b20446 0.49 -1.1 457,978 + SM_b20446 0.49 +3.7 457,978 + SM_b20446 0.49 -0.0 457,979 - SM_b20446 0.49 +0.9 457,979 - SM_b20446 0.49 -0.9 458,140 + SM_b20446 0.63 -1.2 458,140 + SM_b20446 0.63 -1.3 458,300 + SM_b20446 0.76 -0.9 458,300 + SM_b20446 0.76 -0.4 458,301 - SM_b20446 0.76 -1.4 458,301 - SM_b20446 0.76 -3.5 458,563 + +1.1 458,564 - +0.3 458,564 - -0.7 458,564 - -2.1 458,602 + +0.2 458,616 - +0.8 458,677 - -1.4 458,805 + +1.5 458,815 + -3.9 458,950 - -2.2 459,042 + SM_b20447 0.10 +0.4 459,042 + SM_b20447 0.10 -3.2 459,043 - SM_b20447 0.11 +0.7 459,213 + SM_b20447 0.21 -2.1 459,259 + SM_b20447 0.23 -2.6 459,259 + SM_b20447 0.23 +0.9 459,260 - SM_b20447 0.23 -2.4 459,490 - SM_b20447 0.37 +0.2 459,497 - SM_b20447 0.37 +0.6
Or see this region's nucleotide sequence