Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20436

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20435 and SM_b20436 are separated by 397 nucleotidesSM_b20436 and SM_b20441 are separated by 254 nucleotides SM_b20435: SM_b20435 - hypothetical protein, at 449,585 to 450,580 _b20435 SM_b20436: SM_b20436 - nitrate transporter protein, at 450,978 to 452,252 _b20436 SM_b20441: SM_b20441 - transcriptional regulator, at 452,507 to 453,247 _b20441 Position (kb) 450 451 452 453Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 450.294 kb on + strand, within SM_b20435at 450.338 kb on - strand, within SM_b20435at 450.438 kb on + strand, within SM_b20435at 450.439 kb on - strand, within SM_b20435at 450.439 kb on - strand, within SM_b20435at 450.517 kb on + strandat 450.648 kb on + strandat 450.808 kb on - strandat 450.974 kb on + strandat 450.974 kb on + strandat 450.974 kb on + strandat 450.974 kb on + strandat 450.975 kb on - strandat 450.975 kb on - strandat 450.975 kb on - strandat 451.008 kb on + strandat 451.008 kb on + strandat 451.008 kb on + strandat 451.009 kb on - strandat 451.009 kb on - strandat 451.010 kb on + strandat 451.011 kb on - strandat 451.011 kb on - strandat 451.072 kb on + strandat 451.105 kb on + strandat 451.106 kb on - strand, within SM_b20436at 451.106 kb on - strand, within SM_b20436at 451.212 kb on + strand, within SM_b20436at 451.279 kb on - strand, within SM_b20436at 451.283 kb on + strand, within SM_b20436at 451.283 kb on + strand, within SM_b20436at 451.283 kb on + strand, within SM_b20436at 451.283 kb on + strand, within SM_b20436at 451.284 kb on - strand, within SM_b20436at 451.284 kb on - strand, within SM_b20436at 451.359 kb on + strand, within SM_b20436at 451.360 kb on - strand, within SM_b20436at 451.656 kb on + strand, within SM_b20436at 451.659 kb on + strand, within SM_b20436at 451.659 kb on + strand, within SM_b20436at 451.660 kb on - strand, within SM_b20436at 451.710 kb on + strand, within SM_b20436at 451.726 kb on - strand, within SM_b20436at 451.768 kb on - strand, within SM_b20436at 451.784 kb on + strand, within SM_b20436at 451.784 kb on + strand, within SM_b20436at 451.784 kb on + strand, within SM_b20436at 451.842 kb on + strand, within SM_b20436at 451.842 kb on + strand, within SM_b20436at 451.843 kb on - strand, within SM_b20436at 451.843 kb on - strand, within SM_b20436at 451.843 kb on - strand, within SM_b20436at 451.843 kb on - strand, within SM_b20436at 451.843 kb on - strand, within SM_b20436at 451.843 kb on - strand, within SM_b20436at 451.843 kb on - strand, within SM_b20436at 451.843 kb on - strand, within SM_b20436at 451.843 kb on - strand, within SM_b20436at 451.998 kb on + strand, within SM_b20436at 452.008 kb on + strand, within SM_b20436at 452.008 kb on + strand, within SM_b20436at 452.008 kb on + strand, within SM_b20436at 452.008 kb on + strand, within SM_b20436at 452.009 kb on - strand, within SM_b20436at 452.009 kb on - strand, within SM_b20436at 452.016 kb on + strand, within SM_b20436at 452.017 kb on - strandat 452.019 kb on + strand, within SM_b20436at 452.019 kb on + strand, within SM_b20436at 452.019 kb on + strand, within SM_b20436at 452.161 kb on + strandat 452.162 kb on - strandat 452.250 kb on + strandat 452.345 kb on - strandat 452.441 kb on + strandat 452.441 kb on + strandat 452.447 kb on - strandat 452.670 kb on + strand, within SM_b20441at 452.670 kb on + strand, within SM_b20441at 452.670 kb on + strand, within SM_b20441at 452.671 kb on - strand, within SM_b20441at 452.720 kb on + strand, within SM_b20441at 452.720 kb on + strand, within SM_b20441at 452.720 kb on + strand, within SM_b20441at 452.721 kb on - strand, within SM_b20441at 452.721 kb on - strand, within SM_b20441at 452.721 kb on - strand, within SM_b20441at 452.721 kb on - strand, within SM_b20441at 452.721 kb on - strand, within SM_b20441at 452.721 kb on - strand, within SM_b20441at 452.857 kb on + strand, within SM_b20441at 452.858 kb on - strand, within SM_b20441at 452.858 kb on - strand, within SM_b20441at 453.044 kb on + strand, within SM_b20441at 453.044 kb on + strand, within SM_b20441

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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450,294 + SM_b20435 0.71 -0.9
450,338 - SM_b20435 0.76 -0.5
450,438 + SM_b20435 0.86 +0.0
450,439 - SM_b20435 0.86 -3.1
450,439 - SM_b20435 0.86 +0.3
450,517 + -1.1
450,648 + -0.1
450,808 - -1.6
450,974 + -1.1
450,974 + +0.3
450,974 + -2.4
450,974 + +0.8
450,975 - +1.0
450,975 - -0.7
450,975 - +0.0
451,008 + +0.3
451,008 + -0.7
451,008 + -1.7
451,009 - +1.7
451,009 - +0.8
451,010 + +0.6
451,011 - +0.5
451,011 - +0.1
451,072 + +0.2
451,105 + -2.9
451,106 - SM_b20436 0.10 -2.1
451,106 - SM_b20436 0.10 +0.2
451,212 + SM_b20436 0.18 -2.4
451,279 - SM_b20436 0.24 -2.4
451,283 + SM_b20436 0.24 +0.5
451,283 + SM_b20436 0.24 +0.8
451,283 + SM_b20436 0.24 -0.3
451,283 + SM_b20436 0.24 -0.5
451,284 - SM_b20436 0.24 +1.3
451,284 - SM_b20436 0.24 -0.8
451,359 + SM_b20436 0.30 +3.2
451,360 - SM_b20436 0.30 +0.1
451,656 + SM_b20436 0.53 +0.5
451,659 + SM_b20436 0.53 -1.1
451,659 + SM_b20436 0.53 -0.4
451,660 - SM_b20436 0.53 +1.1
451,710 + SM_b20436 0.57 +1.3
451,726 - SM_b20436 0.59 +0.1
451,768 - SM_b20436 0.62 -0.5
451,784 + SM_b20436 0.63 +0.1
451,784 + SM_b20436 0.63 -0.9
451,784 + SM_b20436 0.63 -2.1
451,842 + SM_b20436 0.68 +2.5
451,842 + SM_b20436 0.68 +0.5
451,843 - SM_b20436 0.68 +0.2
451,843 - SM_b20436 0.68 -1.5
451,843 - SM_b20436 0.68 -0.1
451,843 - SM_b20436 0.68 +0.9
451,843 - SM_b20436 0.68 -0.7
451,843 - SM_b20436 0.68 +1.9
451,843 - SM_b20436 0.68 +1.2
451,843 - SM_b20436 0.68 +1.2
451,843 - SM_b20436 0.68 +3.2
451,998 + SM_b20436 0.80 -1.4
452,008 + SM_b20436 0.81 +1.6
452,008 + SM_b20436 0.81 +1.2
452,008 + SM_b20436 0.81 +4.1
452,008 + SM_b20436 0.81 +2.3
452,009 - SM_b20436 0.81 +1.9
452,009 - SM_b20436 0.81 +0.4
452,016 + SM_b20436 0.81 +0.0
452,017 - +0.9
452,019 + SM_b20436 0.82 -1.1
452,019 + SM_b20436 0.82 +1.4
452,019 + SM_b20436 0.82 -2.5
452,161 + -0.1
452,162 - +0.9
452,250 + -0.1
452,345 - +0.9
452,441 + -0.5
452,441 + -0.5
452,447 - -0.7
452,670 + SM_b20441 0.22 -0.3
452,670 + SM_b20441 0.22 -0.4
452,670 + SM_b20441 0.22 +4.2
452,671 - SM_b20441 0.22 +1.4
452,720 + SM_b20441 0.29 +0.9
452,720 + SM_b20441 0.29 -0.0
452,720 + SM_b20441 0.29 +0.2
452,721 - SM_b20441 0.29 -2.8
452,721 - SM_b20441 0.29 -3.1
452,721 - SM_b20441 0.29 -0.1
452,721 - SM_b20441 0.29 +0.9
452,721 - SM_b20441 0.29 -0.6
452,721 - SM_b20441 0.29 +1.3
452,857 + SM_b20441 0.47 -0.5
452,858 - SM_b20441 0.47 +2.2
452,858 - SM_b20441 0.47 +1.5
453,044 + SM_b20441 0.72 +2.6
453,044 + SM_b20441 0.72 -0.2

Or see this region's nucleotide sequence