Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20433 and SM_b20434 are separated by 44 nucleotides SM_b20434 and SM_b20435 are separated by 19 nucleotides
SM_b20433: SM_b20433 - ectoine utilization protein EutC, at 447,350 to 448,339
_b20433
SM_b20434: SM_b20434 - hydrolasepeptidase, at 448,384 to 449,565
_b20434
SM_b20435: SM_b20435 - hypothetical protein, at 449,585 to 450,580
_b20435
Position (kb) 448
449
450 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 447.531 kb on - strand, within SM_b20433 at 447.531 kb on - strand, within SM_b20433 at 447.531 kb on - strand, within SM_b20433 at 447.956 kb on - strand, within SM_b20433 at 448.085 kb on + strand, within SM_b20433 at 448.086 kb on - strand, within SM_b20433 at 448.322 kb on - strand at 448.421 kb on - strand at 448.537 kb on + strand, within SM_b20434 at 448.537 kb on + strand, within SM_b20434 at 448.537 kb on + strand, within SM_b20434 at 448.538 kb on - strand at 448.538 kb on - strand, within SM_b20434 at 448.538 kb on - strand, within SM_b20434 at 448.538 kb on - strand, within SM_b20434 at 448.538 kb on - strand, within SM_b20434 at 448.538 kb on - strand, within SM_b20434 at 448.628 kb on - strand, within SM_b20434 at 448.666 kb on + strand, within SM_b20434 at 448.666 kb on + strand, within SM_b20434 at 448.699 kb on + strand, within SM_b20434 at 448.699 kb on + strand, within SM_b20434 at 448.700 kb on - strand, within SM_b20434 at 448.700 kb on - strand, within SM_b20434 at 448.765 kb on + strand, within SM_b20434 at 448.765 kb on + strand, within SM_b20434 at 448.765 kb on + strand, within SM_b20434 at 448.765 kb on + strand, within SM_b20434 at 448.766 kb on - strand, within SM_b20434 at 448.766 kb on - strand, within SM_b20434 at 448.766 kb on - strand, within SM_b20434 at 448.808 kb on + strand, within SM_b20434 at 448.885 kb on + strand, within SM_b20434 at 448.985 kb on - strand, within SM_b20434 at 448.995 kb on + strand, within SM_b20434 at 449.143 kb on + strand, within SM_b20434 at 449.144 kb on - strand, within SM_b20434 at 449.235 kb on + strand, within SM_b20434 at 449.317 kb on + strand, within SM_b20434 at 449.318 kb on - strand, within SM_b20434 at 449.366 kb on - strand, within SM_b20434 at 449.768 kb on + strand, within SM_b20435 at 449.768 kb on + strand, within SM_b20435 at 449.768 kb on + strand, within SM_b20435 at 449.858 kb on + strand, within SM_b20435 at 449.966 kb on + strand, within SM_b20435 at 450.294 kb on + strand, within SM_b20435 at 450.338 kb on - strand, within SM_b20435 at 450.438 kb on + strand, within SM_b20435 at 450.439 kb on - strand, within SM_b20435 at 450.439 kb on - strand, within SM_b20435 at 450.517 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 447,531 - SM_b20433 0.18 -0.4 447,531 - SM_b20433 0.18 +2.1 447,531 - SM_b20433 0.18 +1.4 447,956 - SM_b20433 0.61 +0.2 448,085 + SM_b20433 0.74 +1.2 448,086 - SM_b20433 0.74 -2.4 448,322 - -0.1 448,421 - -0.1 448,537 + SM_b20434 0.13 -0.1 448,537 + SM_b20434 0.13 +2.2 448,537 + SM_b20434 0.13 +0.1 448,538 - -0.7 448,538 - SM_b20434 0.13 -2.4 448,538 - SM_b20434 0.13 -0.7 448,538 - SM_b20434 0.13 -0.3 448,538 - SM_b20434 0.13 +1.6 448,538 - SM_b20434 0.13 +0.9 448,628 - SM_b20434 0.21 +2.9 448,666 + SM_b20434 0.24 -0.7 448,666 + SM_b20434 0.24 +1.5 448,699 + SM_b20434 0.27 +1.4 448,699 + SM_b20434 0.27 +1.5 448,700 - SM_b20434 0.27 +0.7 448,700 - SM_b20434 0.27 -1.9 448,765 + SM_b20434 0.32 -1.4 448,765 + SM_b20434 0.32 -3.7 448,765 + SM_b20434 0.32 -1.5 448,765 + SM_b20434 0.32 -1.6 448,766 - SM_b20434 0.32 -0.6 448,766 - SM_b20434 0.32 +0.5 448,766 - SM_b20434 0.32 +0.2 448,808 + SM_b20434 0.36 -2.0 448,885 + SM_b20434 0.42 -1.5 448,985 - SM_b20434 0.51 +0.2 448,995 + SM_b20434 0.52 +1.7 449,143 + SM_b20434 0.64 +0.9 449,144 - SM_b20434 0.64 +0.3 449,235 + SM_b20434 0.72 -0.5 449,317 + SM_b20434 0.79 +1.3 449,318 - SM_b20434 0.79 -3.3 449,366 - SM_b20434 0.83 +1.8 449,768 + SM_b20435 0.18 +1.8 449,768 + SM_b20435 0.18 +0.8 449,768 + SM_b20435 0.18 -0.2 449,858 + SM_b20435 0.27 -0.8 449,966 + SM_b20435 0.38 -0.9 450,294 + SM_b20435 0.71 -0.9 450,338 - SM_b20435 0.76 -0.5 450,438 + SM_b20435 0.86 +0.0 450,439 - SM_b20435 0.86 -3.1 450,439 - SM_b20435 0.86 +0.3 450,517 + -1.1
Or see this region's nucleotide sequence