Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20427 and SM_b20428 are separated by 58 nucleotides SM_b20428 and SM_b20429 are separated by 102 nucleotides SM_b20429 and SM_b20430 are separated by 2 nucleotides
SM_b20427: SM_b20427 - amino acid ABC transporter ATP-binding protein, at 442,445 to 443,230
_b20427
SM_b20428: SM_b20428 - amino acid ABC transporter substrate-binding protein, at 443,289 to 444,140
_b20428
SM_b20429: SM_b20429 - amino acid ABC transporter permease, at 444,243 to 444,902
_b20429
SM_b20430: SM_b20430 - amino acid ABC transporter permease, at 444,905 to 445,567
_b20430
Position (kb) 443
444
445 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 442.653 kb on - strand, within SM_b20427 at 442.759 kb on + strand, within SM_b20427 at 442.760 kb on - strand, within SM_b20427 at 443.228 kb on + strand at 443.441 kb on + strand, within SM_b20428 at 443.547 kb on + strand, within SM_b20428 at 443.712 kb on + strand, within SM_b20428 at 443.712 kb on + strand, within SM_b20428 at 443.874 kb on + strand, within SM_b20428 at 443.967 kb on + strand, within SM_b20428 at 444.078 kb on + strand at 444.139 kb on - strand at 444.261 kb on + strand at 444.262 kb on - strand at 444.402 kb on + strand, within SM_b20429 at 444.402 kb on + strand, within SM_b20429 at 444.403 kb on - strand, within SM_b20429 at 444.403 kb on - strand, within SM_b20429 at 444.403 kb on - strand, within SM_b20429 at 444.404 kb on + strand, within SM_b20429 at 444.428 kb on + strand, within SM_b20429 at 444.429 kb on - strand, within SM_b20429 at 444.429 kb on - strand, within SM_b20429 at 444.453 kb on + strand, within SM_b20429 at 444.454 kb on - strand, within SM_b20429 at 444.478 kb on + strand, within SM_b20429 at 444.479 kb on - strand, within SM_b20429 at 444.535 kb on - strand, within SM_b20429 at 444.816 kb on + strand, within SM_b20429 at 444.817 kb on - strand, within SM_b20429 at 445.118 kb on + strand, within SM_b20430 at 445.129 kb on - strand, within SM_b20430 at 445.130 kb on + strand, within SM_b20430 at 445.130 kb on + strand, within SM_b20430 at 445.131 kb on - strand, within SM_b20430
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 442,653 - SM_b20427 0.26 +0.2 442,759 + SM_b20427 0.40 -2.2 442,760 - SM_b20427 0.40 -0.1 443,228 + -0.1 443,441 + SM_b20428 0.18 +0.6 443,547 + SM_b20428 0.30 -3.5 443,712 + SM_b20428 0.50 -1.2 443,712 + SM_b20428 0.50 +1.3 443,874 + SM_b20428 0.69 -3.4 443,967 + SM_b20428 0.80 -2.0 444,078 + -2.4 444,139 - +0.1 444,261 + -1.5 444,262 - +0.1 444,402 + SM_b20429 0.24 +0.0 444,402 + SM_b20429 0.24 +0.1 444,403 - SM_b20429 0.24 -2.1 444,403 - SM_b20429 0.24 -3.6 444,403 - SM_b20429 0.24 +0.2 444,404 + SM_b20429 0.24 +0.6 444,428 + SM_b20429 0.28 -1.2 444,429 - SM_b20429 0.28 -1.1 444,429 - SM_b20429 0.28 -0.3 444,453 + SM_b20429 0.32 -0.3 444,454 - SM_b20429 0.32 +1.2 444,478 + SM_b20429 0.36 -0.8 444,479 - SM_b20429 0.36 +1.3 444,535 - SM_b20429 0.44 -1.2 444,816 + SM_b20429 0.87 -0.3 444,817 - SM_b20429 0.87 +0.4 445,118 + SM_b20430 0.32 -0.5 445,129 - SM_b20430 0.34 -2.9 445,130 + SM_b20430 0.34 -0.9 445,130 + SM_b20430 0.34 -2.5 445,131 - SM_b20430 0.34 -0.2
Or see this region's nucleotide sequence