Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20387 and SM_b20388 are separated by 393 nucleotides SM_b20388 and SM_b20389 are separated by 14 nucleotides
SM_b20387: SM_b20387 - transcriptional regulator, at 398,867 to 399,586
_b20387
SM_b20388: SM_b20388 - NADPH:quinone oxidoreductase, at 399,980 to 400,960
_b20388
SM_b20389: SM_b20389 - hypothetical protein, at 400,975 to 402,000
_b20389
Position (kb) 399
400
401 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 399.057 kb on + strand, within SM_b20387 at 399.131 kb on + strand, within SM_b20387 at 399.153 kb on - strand, within SM_b20387 at 399.570 kb on - strand at 399.570 kb on - strand at 399.880 kb on + strand at 399.981 kb on + strand at 399.981 kb on + strand at 399.982 kb on - strand at 400.066 kb on - strand at 400.066 kb on - strand at 400.158 kb on + strand, within SM_b20388 at 400.158 kb on + strand, within SM_b20388 at 400.159 kb on - strand, within SM_b20388 at 400.193 kb on + strand, within SM_b20388 at 400.220 kb on + strand, within SM_b20388 at 400.228 kb on + strand, within SM_b20388 at 400.228 kb on + strand, within SM_b20388 at 400.265 kb on + strand, within SM_b20388 at 400.311 kb on - strand at 400.377 kb on + strand, within SM_b20388 at 400.378 kb on - strand, within SM_b20388 at 400.450 kb on + strand, within SM_b20388 at 400.451 kb on - strand, within SM_b20388 at 400.464 kb on + strand, within SM_b20388 at 400.489 kb on - strand, within SM_b20388 at 400.539 kb on - strand, within SM_b20388 at 400.613 kb on + strand, within SM_b20388 at 400.614 kb on - strand, within SM_b20388 at 400.614 kb on - strand, within SM_b20388 at 400.615 kb on - strand, within SM_b20388 at 400.659 kb on + strand, within SM_b20388 at 400.659 kb on + strand, within SM_b20388 at 400.856 kb on + strand, within SM_b20388 at 400.856 kb on + strand, within SM_b20388 at 400.856 kb on + strand, within SM_b20388 at 400.856 kb on + strand, within SM_b20388 at 400.857 kb on - strand, within SM_b20388 at 400.857 kb on - strand, within SM_b20388 at 400.857 kb on - strand, within SM_b20388 at 401.643 kb on - strand, within SM_b20389 at 401.690 kb on + strand, within SM_b20389 at 401.690 kb on + strand, within SM_b20389 at 401.690 kb on + strand, within SM_b20389 at 401.690 kb on + strand, within SM_b20389 at 401.690 kb on + strand, within SM_b20389 at 401.691 kb on - strand, within SM_b20389 at 401.691 kb on - strand, within SM_b20389 at 401.691 kb on - strand, within SM_b20389 at 401.691 kb on - strand, within SM_b20389 at 401.691 kb on - strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.771 kb on - strand, within SM_b20389 at 401.771 kb on - strand, within SM_b20389 at 401.862 kb on - strand, within SM_b20389
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 399,057 + SM_b20387 0.26 -1.4 399,131 + SM_b20387 0.37 +0.3 399,153 - SM_b20387 0.40 -0.3 399,570 - -0.4 399,570 - +2.2 399,880 + -1.5 399,981 + +0.9 399,981 + -0.7 399,982 - +0.5 400,066 - -0.2 400,066 - -3.7 400,158 + SM_b20388 0.18 +0.4 400,158 + SM_b20388 0.18 -0.6 400,159 - SM_b20388 0.18 +2.7 400,193 + SM_b20388 0.22 -0.2 400,220 + SM_b20388 0.24 +1.1 400,228 + SM_b20388 0.25 -2.8 400,228 + SM_b20388 0.25 -0.3 400,265 + SM_b20388 0.29 +0.9 400,311 - +0.9 400,377 + SM_b20388 0.40 +0.1 400,378 - SM_b20388 0.41 +0.7 400,450 + SM_b20388 0.48 +2.0 400,451 - SM_b20388 0.48 +0.5 400,464 + SM_b20388 0.49 +0.8 400,489 - SM_b20388 0.52 -0.5 400,539 - SM_b20388 0.57 +2.4 400,613 + SM_b20388 0.65 -2.5 400,614 - SM_b20388 0.65 +0.1 400,614 - SM_b20388 0.65 +1.2 400,615 - SM_b20388 0.65 -0.1 400,659 + SM_b20388 0.69 +0.4 400,659 + SM_b20388 0.69 -1.1 400,856 + SM_b20388 0.89 -0.0 400,856 + SM_b20388 0.89 -0.0 400,856 + SM_b20388 0.89 +0.0 400,856 + SM_b20388 0.89 -0.9 400,857 - SM_b20388 0.89 +0.9 400,857 - SM_b20388 0.89 +0.6 400,857 - SM_b20388 0.89 +2.0 401,643 - SM_b20389 0.65 -0.1 401,690 + SM_b20389 0.70 -0.7 401,690 + SM_b20389 0.70 -1.7 401,690 + SM_b20389 0.70 +0.6 401,690 + SM_b20389 0.70 -1.7 401,690 + SM_b20389 0.70 +0.2 401,691 - SM_b20389 0.70 +1.2 401,691 - SM_b20389 0.70 -2.1 401,691 - SM_b20389 0.70 -0.7 401,691 - SM_b20389 0.70 +0.3 401,691 - SM_b20389 0.70 -1.2 401,770 + SM_b20389 0.77 -1.8 401,770 + SM_b20389 0.77 +3.0 401,770 + SM_b20389 0.77 -4.0 401,770 + SM_b20389 0.77 -0.9 401,770 + SM_b20389 0.77 +1.1 401,770 + SM_b20389 0.77 +1.2 401,771 - SM_b20389 0.78 -0.3 401,771 - SM_b20389 0.78 +0.4 401,862 - SM_b20389 0.86 -1.7
Or see this region's nucleotide sequence