Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20384 and SM_b20385 are separated by 13 nucleotides SM_b20385 and SM_b20386 overlap by 4 nucleotides SM_b20386 and SM_b20387 are separated by 1 nucleotides
SM_b20384: SM_b20384 - dipeptidase, at 395,419 to 396,390
_b20384
SM_b20385: SM_b20385 - hypothetical protein, at 396,404 to 397,132
_b20385
SM_b20386: SM_b20386 - hypothetical protein, at 397,129 to 398,865
_b20386
SM_b20387: SM_b20387 - transcriptional regulator, at 398,867 to 399,586
_b20387
Position (kb) 397
398
399 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 396.146 kb on + strand, within SM_b20384 at 396.321 kb on - strand at 396.544 kb on - strand, within SM_b20385 at 396.996 kb on + strand, within SM_b20385 at 396.996 kb on + strand at 397.052 kb on + strand, within SM_b20385 at 397.052 kb on + strand, within SM_b20385 at 397.052 kb on + strand, within SM_b20385 at 397.053 kb on - strand, within SM_b20385 at 397.132 kb on + strand at 397.151 kb on + strand at 397.151 kb on + strand at 397.152 kb on - strand at 397.152 kb on - strand at 397.152 kb on - strand at 397.152 kb on - strand at 397.293 kb on + strand at 397.293 kb on + strand at 397.568 kb on + strand, within SM_b20386 at 397.568 kb on + strand, within SM_b20386 at 397.568 kb on + strand, within SM_b20386 at 397.569 kb on - strand, within SM_b20386 at 397.732 kb on + strand, within SM_b20386 at 397.733 kb on - strand, within SM_b20386 at 397.733 kb on - strand, within SM_b20386 at 397.733 kb on - strand, within SM_b20386 at 398.217 kb on + strand, within SM_b20386 at 398.217 kb on + strand, within SM_b20386 at 398.217 kb on + strand, within SM_b20386 at 398.217 kb on + strand, within SM_b20386 at 398.217 kb on + strand, within SM_b20386 at 398.217 kb on + strand, within SM_b20386 at 398.217 kb on + strand, within SM_b20386 at 398.218 kb on - strand, within SM_b20386 at 398.218 kb on - strand, within SM_b20386 at 398.218 kb on - strand, within SM_b20386 at 398.219 kb on + strand, within SM_b20386 at 398.220 kb on - strand, within SM_b20386 at 398.220 kb on - strand, within SM_b20386 at 398.302 kb on - strand, within SM_b20386 at 398.302 kb on - strand, within SM_b20386 at 398.468 kb on + strand, within SM_b20386 at 398.468 kb on + strand, within SM_b20386 at 398.469 kb on - strand, within SM_b20386 at 398.469 kb on - strand, within SM_b20386 at 398.603 kb on + strand, within SM_b20386 at 398.646 kb on - strand, within SM_b20386 at 399.057 kb on + strand, within SM_b20387 at 399.131 kb on + strand, within SM_b20387 at 399.153 kb on - strand, within SM_b20387 at 399.570 kb on - strand at 399.570 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 396,146 + SM_b20384 0.75 -0.3 396,321 - -1.4 396,544 - SM_b20385 0.19 -0.5 396,996 + SM_b20385 0.81 +1.0 396,996 + +0.9 397,052 + SM_b20385 0.89 -0.7 397,052 + SM_b20385 0.89 +1.6 397,052 + SM_b20385 0.89 -2.5 397,053 - SM_b20385 0.89 -1.9 397,132 + -3.8 397,151 + +0.8 397,151 + -0.8 397,152 - -0.1 397,152 - +0.1 397,152 - -0.4 397,152 - -1.7 397,293 + -0.7 397,293 + +1.3 397,568 + SM_b20386 0.25 +2.9 397,568 + SM_b20386 0.25 +0.1 397,568 + SM_b20386 0.25 +0.0 397,569 - SM_b20386 0.25 +1.5 397,732 + SM_b20386 0.35 +1.3 397,733 - SM_b20386 0.35 +4.3 397,733 - SM_b20386 0.35 -1.7 397,733 - SM_b20386 0.35 -1.5 398,217 + SM_b20386 0.63 +4.5 398,217 + SM_b20386 0.63 -2.6 398,217 + SM_b20386 0.63 +0.7 398,217 + SM_b20386 0.63 +0.1 398,217 + SM_b20386 0.63 -0.1 398,217 + SM_b20386 0.63 -0.7 398,217 + SM_b20386 0.63 +1.3 398,218 - SM_b20386 0.63 +1.3 398,218 - SM_b20386 0.63 -0.6 398,218 - SM_b20386 0.63 +3.3 398,219 + SM_b20386 0.63 -3.0 398,220 - SM_b20386 0.63 +1.4 398,220 - SM_b20386 0.63 +0.9 398,302 - SM_b20386 0.68 +0.8 398,302 - SM_b20386 0.68 +0.7 398,468 + SM_b20386 0.77 +2.7 398,468 + SM_b20386 0.77 -1.0 398,469 - SM_b20386 0.77 +0.9 398,469 - SM_b20386 0.77 +0.6 398,603 + SM_b20386 0.85 -1.0 398,646 - SM_b20386 0.87 +1.2 399,057 + SM_b20387 0.26 -1.4 399,131 + SM_b20387 0.37 +0.3 399,153 - SM_b20387 0.40 -0.3 399,570 - -0.4 399,570 - +2.2
Or see this region's nucleotide sequence