Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20376 and SM_b20377 are separated by 43 nucleotides SM_b20377 and SM_b20378 are separated by 33 nucleotides SM_b20378 and SM_b20379 are separated by 9 nucleotides
SM_b20376: SM_b20376 - hypothetical protein, at 387,641 to 388,021
_b20376
SM_b20377: SM_b20377 - translation initiation inhibitor protein, at 388,065 to 388,448
_b20377
SM_b20378: SM_b20378 - aldehyde dehydrogenase, at 388,482 to 389,945
_b20378
SM_b20379: SM_b20379 - aminotransferase, at 389,955 to 391,340
_b20379
Position (kb) 388
389
390 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 387.753 kb on + strand, within SM_b20376 at 387.755 kb on + strand, within SM_b20376 at 387.756 kb on - strand, within SM_b20376 at 387.756 kb on - strand, within SM_b20376 at 387.795 kb on + strand, within SM_b20376 at 387.795 kb on + strand, within SM_b20376 at 387.796 kb on - strand, within SM_b20376 at 387.866 kb on + strand, within SM_b20376 at 387.867 kb on - strand, within SM_b20376 at 387.867 kb on - strand, within SM_b20376 at 387.929 kb on + strand, within SM_b20376 at 387.930 kb on - strand, within SM_b20376 at 388.180 kb on + strand, within SM_b20377 at 388.180 kb on + strand, within SM_b20377 at 388.180 kb on + strand, within SM_b20377 at 388.180 kb on + strand, within SM_b20377 at 388.180 kb on + strand, within SM_b20377 at 388.181 kb on - strand, within SM_b20377 at 388.564 kb on + strand at 388.565 kb on - strand at 388.693 kb on + strand, within SM_b20378 at 388.693 kb on + strand, within SM_b20378 at 388.694 kb on - strand, within SM_b20378 at 388.694 kb on - strand, within SM_b20378 at 388.965 kb on + strand, within SM_b20378 at 388.966 kb on - strand, within SM_b20378 at 388.966 kb on - strand, within SM_b20378 at 388.966 kb on - strand, within SM_b20378 at 388.966 kb on - strand, within SM_b20378 at 389.056 kb on + strand, within SM_b20378 at 389.057 kb on - strand, within SM_b20378 at 389.094 kb on - strand, within SM_b20378 at 389.094 kb on - strand, within SM_b20378 at 389.563 kb on + strand, within SM_b20378 at 389.878 kb on + strand at 389.879 kb on - strand at 389.880 kb on + strand at 389.917 kb on + strand at 389.917 kb on + strand at 389.994 kb on - strand at 389.994 kb on - strand at 389.994 kb on - strand at 390.177 kb on - strand, within SM_b20379 at 390.177 kb on - strand, within SM_b20379 at 390.288 kb on + strand, within SM_b20379 at 390.288 kb on + strand, within SM_b20379 at 390.288 kb on + strand, within SM_b20379 at 390.289 kb on - strand, within SM_b20379 at 390.317 kb on - strand, within SM_b20379 at 390.463 kb on + strand, within SM_b20379 at 390.464 kb on - strand, within SM_b20379 at 390.464 kb on - strand, within SM_b20379 at 390.464 kb on - strand, within SM_b20379 at 390.589 kb on + strand, within SM_b20379 at 390.590 kb on - strand, within SM_b20379 at 390.805 kb on - strand, within SM_b20379 at 390.889 kb on + strand, within SM_b20379 at 390.890 kb on - strand, within SM_b20379
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 387,753 + SM_b20376 0.29 +0.0 387,755 + SM_b20376 0.30 +0.8 387,756 - SM_b20376 0.30 +1.4 387,756 - SM_b20376 0.30 +0.3 387,795 + SM_b20376 0.40 -2.1 387,795 + SM_b20376 0.40 -0.8 387,796 - SM_b20376 0.41 +1.2 387,866 + SM_b20376 0.59 +0.9 387,867 - SM_b20376 0.59 +0.1 387,867 - SM_b20376 0.59 -0.6 387,929 + SM_b20376 0.76 -1.1 387,930 - SM_b20376 0.76 -2.4 388,180 + SM_b20377 0.30 -4.7 388,180 + SM_b20377 0.30 -4.7 388,180 + SM_b20377 0.30 -0.7 388,180 + SM_b20377 0.30 +1.7 388,180 + SM_b20377 0.30 -0.7 388,181 - SM_b20377 0.30 +0.9 388,564 + -1.1 388,565 - +0.9 388,693 + SM_b20378 0.14 +1.7 388,693 + SM_b20378 0.14 -0.2 388,694 - SM_b20378 0.14 -0.7 388,694 - SM_b20378 0.14 -0.3 388,965 + SM_b20378 0.33 +0.2 388,966 - SM_b20378 0.33 -0.1 388,966 - SM_b20378 0.33 -0.2 388,966 - SM_b20378 0.33 +0.2 388,966 - SM_b20378 0.33 +0.1 389,056 + SM_b20378 0.39 +1.5 389,057 - SM_b20378 0.39 +0.7 389,094 - SM_b20378 0.42 +1.3 389,094 - SM_b20378 0.42 +0.3 389,563 + SM_b20378 0.74 +1.3 389,878 + -0.1 389,879 - -3.3 389,880 + -0.8 389,917 + -1.1 389,917 + -1.0 389,994 - -0.1 389,994 - -0.8 389,994 - +0.3 390,177 - SM_b20379 0.16 +1.6 390,177 - SM_b20379 0.16 +1.6 390,288 + SM_b20379 0.24 +0.4 390,288 + SM_b20379 0.24 -0.4 390,288 + SM_b20379 0.24 +2.0 390,289 - SM_b20379 0.24 -0.9 390,317 - SM_b20379 0.26 -0.1 390,463 + SM_b20379 0.37 -1.3 390,464 - SM_b20379 0.37 +1.6 390,464 - SM_b20379 0.37 +0.2 390,464 - SM_b20379 0.37 +0.9 390,589 + SM_b20379 0.46 +0.0 390,590 - SM_b20379 0.46 +1.1 390,805 - SM_b20379 0.61 +2.0 390,889 + SM_b20379 0.67 -3.1 390,890 - SM_b20379 0.67 +0.6
Or see this region's nucleotide sequence