Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20364 and SM_b20365 are separated by 174 nucleotides SM_b20365 and SM_b20366 are separated by 177 nucleotides
SM_b20364: SM_b20364 - iron ABC transporter permease, at 374,421 to 376,649
_b20364
SM_b20365: SM_b20365 - iron ABC transporter substrate-binding protein, at 376,824 to 377,852
_b20365
SM_b20366: SM_b20366 - LacI family transcriptional regulator, at 378,030 to 379,034
_b20366
Position (kb) 376
377
378 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 375.887 kb on - strand, within SM_b20364 at 375.887 kb on - strand, within SM_b20364 at 376.043 kb on + strand, within SM_b20364 at 376.576 kb on + strand at 376.653 kb on + strand at 376.653 kb on + strand at 376.653 kb on + strand at 376.654 kb on - strand at 376.695 kb on + strand at 376.695 kb on + strand at 376.696 kb on - strand at 376.696 kb on - strand at 376.894 kb on + strand at 376.894 kb on + strand at 376.895 kb on - strand at 376.910 kb on - strand at 376.910 kb on - strand at 377.039 kb on - strand, within SM_b20365 at 377.275 kb on + strand, within SM_b20365 at 377.329 kb on + strand, within SM_b20365 at 377.330 kb on - strand, within SM_b20365 at 377.449 kb on + strand, within SM_b20365 at 377.473 kb on + strand, within SM_b20365 at 377.554 kb on + strand, within SM_b20365 at 377.554 kb on + strand, within SM_b20365 at 377.659 kb on + strand, within SM_b20365 at 377.659 kb on + strand, within SM_b20365 at 377.955 kb on - strand at 378.104 kb on + strand at 378.155 kb on - strand, within SM_b20366 at 378.236 kb on + strand, within SM_b20366 at 378.236 kb on + strand, within SM_b20366 at 378.262 kb on - strand, within SM_b20366 at 378.699 kb on + strand, within SM_b20366
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 375,887 - SM_b20364 0.66 -2.2 375,887 - SM_b20364 0.66 +1.5 376,043 + SM_b20364 0.73 -1.4 376,576 + +0.5 376,653 + -0.4 376,653 + +0.2 376,653 + +0.9 376,654 - -2.2 376,695 + +0.8 376,695 + +0.3 376,696 - +1.4 376,696 - -0.1 376,894 + -2.4 376,894 + +0.9 376,895 - +0.7 376,910 - -1.7 376,910 - -0.8 377,039 - SM_b20365 0.21 +0.9 377,275 + SM_b20365 0.44 +0.7 377,329 + SM_b20365 0.49 +0.2 377,330 - SM_b20365 0.49 -0.1 377,449 + SM_b20365 0.61 -0.4 377,473 + SM_b20365 0.63 +3.9 377,554 + SM_b20365 0.71 +0.6 377,554 + SM_b20365 0.71 +1.0 377,659 + SM_b20365 0.81 -0.4 377,659 + SM_b20365 0.81 -0.2 377,955 - +1.7 378,104 + -2.9 378,155 - SM_b20366 0.12 +1.6 378,236 + SM_b20366 0.20 +1.2 378,236 + SM_b20366 0.20 -0.7 378,262 - SM_b20366 0.23 +1.6 378,699 + SM_b20366 0.67 -0.5
Or see this region's nucleotide sequence