Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20330 and SM_b20331 are separated by 212 nucleotides SM_b20331 and SM_b20332 are separated by 691 nucleotides
SM_b20330: SM_b20330 - glucoside 3-dehydrogenase; active on raffinose or trehalose (thuB) (EC 1.1.99.13) <small>(from data)</small>, at 333,286 to 334,383
_b20330
SM_b20331: SM_b20331 - hypothetical protein, at 334,596 to 334,952
_b20331
SM_b20332: SM_b20332 - hypothetical protein, at 335,644 to 336,585
_b20332
Position (kb) 334
335 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 333.748 kb on + strand, within SM_b20330 at 333.748 kb on + strand, within SM_b20330 at 333.749 kb on - strand, within SM_b20330 at 333.749 kb on - strand, within SM_b20330 at 333.967 kb on + strand at 333.968 kb on - strand, within SM_b20330 at 334.119 kb on + strand, within SM_b20330 at 334.119 kb on + strand, within SM_b20330 at 334.213 kb on + strand, within SM_b20330 at 334.214 kb on - strand, within SM_b20330 at 334.214 kb on - strand, within SM_b20330 at 334.391 kb on - strand at 334.466 kb on - strand at 334.495 kb on + strand at 334.574 kb on - strand at 334.598 kb on - strand at 334.598 kb on - strand at 334.618 kb on + strand at 335.004 kb on + strand at 335.004 kb on + strand at 335.004 kb on + strand at 335.043 kb on + strand at 335.136 kb on + strand at 335.147 kb on + strand at 335.148 kb on - strand at 335.148 kb on - strand at 335.154 kb on + strand at 335.154 kb on + strand at 335.154 kb on + strand at 335.154 kb on + strand at 335.155 kb on - strand at 335.155 kb on - strand at 335.155 kb on - strand at 335.158 kb on + strand at 335.159 kb on - strand at 335.159 kb on - strand at 335.236 kb on + strand at 335.327 kb on - strand at 335.395 kb on + strand at 335.396 kb on - strand at 335.396 kb on - strand at 335.423 kb on + strand at 335.423 kb on + strand at 335.424 kb on - strand at 335.566 kb on - strand at 335.566 kb on - strand at 335.747 kb on + strand, within SM_b20332 at 335.747 kb on + strand, within SM_b20332 at 335.795 kb on - strand, within SM_b20332 at 335.887 kb on + strand, within SM_b20332 at 335.888 kb on - strand, within SM_b20332 at 335.920 kb on + strand, within SM_b20332 at 335.920 kb on + strand, within SM_b20332 at 335.920 kb on + strand, within SM_b20332 at 335.921 kb on - strand, within SM_b20332 at 335.921 kb on - strand, within SM_b20332 at 335.921 kb on - strand, within SM_b20332
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 333,748 + SM_b20330 0.42 -0.3 333,748 + SM_b20330 0.42 +1.1 333,749 - SM_b20330 0.42 +4.8 333,749 - SM_b20330 0.42 -0.2 333,967 + -1.9 333,968 - SM_b20330 0.62 +1.7 334,119 + SM_b20330 0.76 -3.6 334,119 + SM_b20330 0.76 -0.9 334,213 + SM_b20330 0.84 +0.8 334,214 - SM_b20330 0.85 -1.9 334,214 - SM_b20330 0.85 -0.7 334,391 - +0.1 334,466 - +0.9 334,495 + -2.4 334,574 - +0.7 334,598 - -0.5 334,598 - -0.4 334,618 + +0.3 335,004 + +2.9 335,004 + +0.0 335,004 + +1.1 335,043 + -1.1 335,136 + -0.4 335,147 + +2.1 335,148 - +0.2 335,148 - +0.9 335,154 + -0.4 335,154 + -1.1 335,154 + +0.9 335,154 + +1.1 335,155 - +0.3 335,155 - +0.1 335,155 - +0.8 335,158 + -1.3 335,159 - -2.1 335,159 - +1.9 335,236 + -0.3 335,327 - +0.4 335,395 + +0.6 335,396 - -0.2 335,396 - +0.0 335,423 + +1.1 335,423 + -2.1 335,424 - +2.5 335,566 - -0.5 335,566 - -1.5 335,747 + SM_b20332 0.11 -1.6 335,747 + SM_b20332 0.11 -1.4 335,795 - SM_b20332 0.16 -2.3 335,887 + SM_b20332 0.26 -3.8 335,888 - SM_b20332 0.26 -1.2 335,920 + SM_b20332 0.29 +0.5 335,920 + SM_b20332 0.29 -2.2 335,920 + SM_b20332 0.29 -0.1 335,921 - SM_b20332 0.29 -2.2 335,921 - SM_b20332 0.29 -2.2 335,921 - SM_b20332 0.29 -0.8
Or see this region's nucleotide sequence