Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20318 and SM_b20319 are separated by 50 nucleotides SM_b20319 and SM_b20320 are separated by 140 nucleotides
SM_b20318: SM_b20318 - sugar ABC transporter permease, at 320,500 to 321,531
_b20318
SM_b20319: SM_b20319 - hypothetical protein, at 321,582 to 322,799
_b20319
SM_b20320: SM_b20320 - TRAP-type large permease component, at 322,940 to 323,935
_b20320
Position (kb) 321
322
323 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 320.595 kb on + strand at 320.595 kb on + strand at 320.596 kb on - strand at 320.753 kb on + strand, within SM_b20318 at 320.753 kb on + strand, within SM_b20318 at 320.753 kb on + strand, within SM_b20318 at 320.753 kb on + strand, within SM_b20318 at 320.785 kb on + strand, within SM_b20318 at 320.786 kb on - strand, within SM_b20318 at 320.786 kb on - strand, within SM_b20318 at 320.786 kb on - strand, within SM_b20318 at 320.812 kb on + strand, within SM_b20318 at 320.813 kb on - strand, within SM_b20318 at 320.813 kb on - strand, within SM_b20318 at 320.873 kb on + strand, within SM_b20318 at 321.083 kb on - strand, within SM_b20318 at 321.121 kb on + strand, within SM_b20318 at 321.122 kb on - strand, within SM_b20318 at 321.122 kb on - strand, within SM_b20318 at 321.122 kb on - strand, within SM_b20318 at 321.122 kb on - strand, within SM_b20318 at 321.123 kb on + strand, within SM_b20318 at 321.123 kb on + strand, within SM_b20318 at 321.123 kb on + strand at 321.154 kb on - strand, within SM_b20318 at 321.158 kb on - strand, within SM_b20318 at 321.235 kb on + strand, within SM_b20318 at 321.264 kb on + strand, within SM_b20318 at 321.265 kb on - strand, within SM_b20318 at 321.594 kb on - strand at 321.661 kb on + strand at 321.731 kb on + strand, within SM_b20319 at 321.733 kb on + strand, within SM_b20319 at 322.371 kb on + strand, within SM_b20319 at 322.372 kb on - strand, within SM_b20319 at 322.372 kb on - strand, within SM_b20319 at 322.376 kb on - strand, within SM_b20319 at 322.479 kb on - strand, within SM_b20319 at 322.479 kb on - strand, within SM_b20319 at 322.479 kb on - strand, within SM_b20319 at 322.563 kb on - strand, within SM_b20319 at 322.627 kb on + strand, within SM_b20319 at 322.645 kb on - strand, within SM_b20319 at 322.698 kb on - strand at 323.008 kb on - strand at 323.008 kb on - strand at 323.379 kb on + strand, within SM_b20320 at 323.405 kb on - strand, within SM_b20320
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 320,595 + +1.4 320,595 + -2.2 320,596 - -0.6 320,753 + SM_b20318 0.25 -1.0 320,753 + SM_b20318 0.25 -4.0 320,753 + SM_b20318 0.25 -0.6 320,753 + SM_b20318 0.25 -0.2 320,785 + SM_b20318 0.28 +0.2 320,786 - SM_b20318 0.28 +0.5 320,786 - SM_b20318 0.28 -1.6 320,786 - SM_b20318 0.28 +0.3 320,812 + SM_b20318 0.30 +1.7 320,813 - SM_b20318 0.30 +2.0 320,813 - SM_b20318 0.30 -2.2 320,873 + SM_b20318 0.36 +0.4 321,083 - SM_b20318 0.56 +0.5 321,121 + SM_b20318 0.60 +0.5 321,122 - SM_b20318 0.60 -1.1 321,122 - SM_b20318 0.60 +0.4 321,122 - SM_b20318 0.60 +1.0 321,122 - SM_b20318 0.60 +1.5 321,123 + SM_b20318 0.60 +1.1 321,123 + SM_b20318 0.60 -0.8 321,123 + +1.0 321,154 - SM_b20318 0.63 -0.6 321,158 - SM_b20318 0.64 +0.8 321,235 + SM_b20318 0.71 -3.0 321,264 + SM_b20318 0.74 -0.7 321,265 - SM_b20318 0.74 +0.8 321,594 - -2.7 321,661 + +1.2 321,731 + SM_b20319 0.12 +0.5 321,733 + SM_b20319 0.12 -0.0 322,371 + SM_b20319 0.65 -2.1 322,372 - SM_b20319 0.65 -1.0 322,372 - SM_b20319 0.65 +0.2 322,376 - SM_b20319 0.65 -0.6 322,479 - SM_b20319 0.74 +3.5 322,479 - SM_b20319 0.74 -0.6 322,479 - SM_b20319 0.74 -0.8 322,563 - SM_b20319 0.81 -1.8 322,627 + SM_b20319 0.86 -2.4 322,645 - SM_b20319 0.87 +1.6 322,698 - +0.6 323,008 - -0.4 323,008 - -1.4 323,379 + SM_b20320 0.44 +0.2 323,405 - SM_b20320 0.47 -1.6
Or see this region's nucleotide sequence