Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20313

Experiment: Polymyxin B sulfate 0.00005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20312 and SM_b20313 are separated by 113 nucleotidesSM_b20313 and SM_b20314 overlap by 32 nucleotides SM_b20312: SM_b20312 - dihydroxyacetone kinase, at 312,527 to 314,614 _b20312 SM_b20313: SM_b20313 - glycerone kinase, at 314,728 to 315,411 _b20313 SM_b20314: SM_b20314 - glycerone kinase, at 315,380 to 316,372 _b20314 Position (kb) 314 315 316Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 313.730 kb on + strand, within SM_b20312at 313.888 kb on + strand, within SM_b20312at 313.888 kb on - strand, within SM_b20312at 313.993 kb on + strand, within SM_b20312at 313.993 kb on + strand, within SM_b20312at 313.994 kb on - strand, within SM_b20312at 313.994 kb on - strand, within SM_b20312at 314.092 kb on + strand, within SM_b20312at 314.093 kb on - strand, within SM_b20312at 314.093 kb on - strand, within SM_b20312at 314.212 kb on + strand, within SM_b20312at 314.490 kb on + strandat 314.493 kb on + strandat 314.515 kb on - strandat 314.625 kb on - strandat 315.019 kb on + strand, within SM_b20313at 315.020 kb on - strand, within SM_b20313at 315.020 kb on - strand, within SM_b20313at 315.053 kb on + strand, within SM_b20313at 315.294 kb on - strand, within SM_b20313at 315.486 kb on + strand, within SM_b20314at 315.486 kb on + strand, within SM_b20314at 315.487 kb on - strand, within SM_b20314at 315.487 kb on - strand, within SM_b20314at 315.508 kb on - strand, within SM_b20314at 315.562 kb on - strand, within SM_b20314at 316.054 kb on - strand, within SM_b20314at 316.054 kb on - strand, within SM_b20314

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
remove
313,730 + SM_b20312 0.58 -0.1
313,888 + SM_b20312 0.65 -0.3
313,888 - SM_b20312 0.65 -2.6
313,993 + SM_b20312 0.70 +3.7
313,993 + SM_b20312 0.70 -0.1
313,994 - SM_b20312 0.70 -1.4
313,994 - SM_b20312 0.70 -0.6
314,092 + SM_b20312 0.75 +1.2
314,093 - SM_b20312 0.75 -1.9
314,093 - SM_b20312 0.75 +1.8
314,212 + SM_b20312 0.81 +0.8
314,490 + -1.9
314,493 + -2.4
314,515 - +2.5
314,625 - +0.5
315,019 + SM_b20313 0.43 -0.2
315,020 - SM_b20313 0.43 -1.4
315,020 - SM_b20313 0.43 -0.6
315,053 + SM_b20313 0.48 -0.0
315,294 - SM_b20313 0.83 +0.2
315,486 + SM_b20314 0.11 +0.3
315,486 + SM_b20314 0.11 +0.9
315,487 - SM_b20314 0.11 -2.2
315,487 - SM_b20314 0.11 -0.5
315,508 - SM_b20314 0.13 -3.6
315,562 - SM_b20314 0.18 -1.8
316,054 - SM_b20314 0.68 -0.4
316,054 - SM_b20314 0.68 -2.3

Or see this region's nucleotide sequence