Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20281 and SM_b20282 are separated by 3 nucleotides SM_b20282 and SM_b20283 are separated by 10 nucleotides
SM_b20281: SM_b20281 - spermidine/putrescine ABC transporter ATP-binding protein, at 285,617 to 286,687
_b20281
SM_b20282: SM_b20282 - spermidine/putrescine ABC transporter permease, at 286,691 to 287,482
_b20282
SM_b20283: SM_b20283 - spermidine/putrescine ABC transporter permease, at 287,493 to 288,476
_b20283
Position (kb) 286
287
288 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 285.829 kb on - strand, within SM_b20281 at 285.829 kb on - strand, within SM_b20281 at 286.020 kb on + strand, within SM_b20281 at 286.020 kb on + strand, within SM_b20281 at 286.020 kb on + strand, within SM_b20281 at 286.434 kb on + strand, within SM_b20281 at 286.435 kb on - strand, within SM_b20281 at 286.504 kb on - strand, within SM_b20281 at 286.504 kb on - strand, within SM_b20281 at 286.504 kb on - strand, within SM_b20281 at 286.555 kb on + strand, within SM_b20281 at 286.883 kb on + strand, within SM_b20282 at 287.231 kb on + strand, within SM_b20282 at 287.278 kb on - strand, within SM_b20282 at 287.415 kb on + strand at 287.415 kb on + strand at 287.416 kb on - strand at 287.434 kb on - strand at 287.473 kb on - strand at 287.494 kb on + strand at 287.704 kb on + strand, within SM_b20283 at 287.704 kb on + strand, within SM_b20283 at 287.704 kb on + strand, within SM_b20283 at 287.705 kb on - strand, within SM_b20283 at 287.706 kb on + strand, within SM_b20283 at 287.706 kb on + strand, within SM_b20283 at 287.706 kb on + strand, within SM_b20283 at 287.706 kb on + strand, within SM_b20283 at 287.707 kb on - strand, within SM_b20283 at 287.707 kb on - strand, within SM_b20283 at 287.707 kb on - strand, within SM_b20283 at 287.707 kb on - strand, within SM_b20283 at 287.707 kb on - strand, within SM_b20283 at 287.839 kb on + strand, within SM_b20283 at 287.840 kb on - strand, within SM_b20283 at 287.857 kb on + strand, within SM_b20283 at 287.857 kb on + strand, within SM_b20283 at 287.858 kb on - strand, within SM_b20283 at 287.858 kb on - strand, within SM_b20283 at 287.872 kb on + strand, within SM_b20283 at 287.872 kb on + strand, within SM_b20283 at 287.872 kb on + strand, within SM_b20283 at 287.873 kb on - strand, within SM_b20283 at 287.873 kb on - strand, within SM_b20283 at 287.931 kb on - strand, within SM_b20283 at 288.085 kb on + strand, within SM_b20283 at 288.085 kb on + strand, within SM_b20283 at 288.085 kb on + strand, within SM_b20283 at 288.085 kb on + strand, within SM_b20283 at 288.086 kb on - strand, within SM_b20283 at 288.086 kb on - strand, within SM_b20283 at 288.241 kb on + strand, within SM_b20283 at 288.380 kb on - strand at 288.418 kb on + strand at 288.467 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 285,829 - SM_b20281 0.20 -1.1 285,829 - SM_b20281 0.20 +0.9 286,020 + SM_b20281 0.38 -1.0 286,020 + SM_b20281 0.38 -0.5 286,020 + SM_b20281 0.38 -3.5 286,434 + SM_b20281 0.76 +0.9 286,435 - SM_b20281 0.76 -0.8 286,504 - SM_b20281 0.83 -3.7 286,504 - SM_b20281 0.83 -1.4 286,504 - SM_b20281 0.83 +1.9 286,555 + SM_b20281 0.88 +0.9 286,883 + SM_b20282 0.24 +0.7 287,231 + SM_b20282 0.68 +1.2 287,278 - SM_b20282 0.74 +2.7 287,415 + +0.9 287,415 + -0.4 287,416 - +1.1 287,434 - -1.2 287,473 - +0.6 287,494 + -0.8 287,704 + SM_b20283 0.21 -2.1 287,704 + SM_b20283 0.21 +0.9 287,704 + SM_b20283 0.21 -1.4 287,705 - SM_b20283 0.22 +0.6 287,706 + SM_b20283 0.22 -0.5 287,706 + SM_b20283 0.22 +2.0 287,706 + SM_b20283 0.22 +1.9 287,706 + SM_b20283 0.22 -1.2 287,707 - SM_b20283 0.22 +5.1 287,707 - SM_b20283 0.22 +0.9 287,707 - SM_b20283 0.22 +0.2 287,707 - SM_b20283 0.22 +3.0 287,707 - SM_b20283 0.22 +0.1 287,839 + SM_b20283 0.35 -0.0 287,840 - SM_b20283 0.35 -0.1 287,857 + SM_b20283 0.37 +0.1 287,857 + SM_b20283 0.37 +0.4 287,858 - SM_b20283 0.37 -1.3 287,858 - SM_b20283 0.37 +0.5 287,872 + SM_b20283 0.39 -1.9 287,872 + SM_b20283 0.39 +1.3 287,872 + SM_b20283 0.39 -0.8 287,873 - SM_b20283 0.39 +1.5 287,873 - SM_b20283 0.39 -2.7 287,931 - SM_b20283 0.45 -0.6 288,085 + SM_b20283 0.60 -0.6 288,085 + SM_b20283 0.60 -0.1 288,085 + SM_b20283 0.60 +0.3 288,085 + SM_b20283 0.60 -0.1 288,086 - SM_b20283 0.60 +3.5 288,086 - SM_b20283 0.60 +1.5 288,241 + SM_b20283 0.76 -0.7 288,380 - +1.8 288,418 + +1.6 288,467 + +1.4
Or see this region's nucleotide sequence