Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20278 and SM_b20279 are separated by 1 nucleotides SM_b20279 and SM_b20280 are separated by 31 nucleotides SM_b20280 and SM_b20281 are separated by 81 nucleotides
SM_b20278: SM_b20278 - hypothetical protein, at 282,954 to 283,532
_b20278
SM_b20279: SM_b20279 - hypothetical protein, at 283,534 to 284,037
_b20279
SM_b20280: SM_b20280 - hypothetical protein, at 284,069 to 285,535
_b20280
SM_b20281: SM_b20281 - spermidine/putrescine ABC transporter ATP-binding protein, at 285,617 to 286,687
_b20281
Position (kb) 284
285
286 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 283.075 kb on + strand, within SM_b20278 at 283.075 kb on + strand, within SM_b20278 at 283.076 kb on - strand, within SM_b20278 at 283.180 kb on + strand, within SM_b20278 at 283.222 kb on + strand, within SM_b20278 at 283.322 kb on + strand, within SM_b20278 at 283.323 kb on - strand, within SM_b20278 at 283.323 kb on - strand, within SM_b20278 at 283.323 kb on - strand, within SM_b20278 at 283.323 kb on - strand, within SM_b20278 at 283.324 kb on + strand, within SM_b20278 at 283.324 kb on + strand, within SM_b20278 at 283.325 kb on - strand, within SM_b20278 at 283.325 kb on - strand, within SM_b20278 at 283.325 kb on - strand, within SM_b20278 at 283.349 kb on + strand, within SM_b20278 at 283.350 kb on - strand, within SM_b20278 at 283.409 kb on + strand, within SM_b20278 at 283.468 kb on - strand, within SM_b20278 at 283.480 kb on + strand at 283.481 kb on - strand at 283.481 kb on - strand at 283.481 kb on - strand at 283.481 kb on - strand at 283.618 kb on - strand, within SM_b20279 at 283.808 kb on + strand, within SM_b20279 at 283.808 kb on + strand, within SM_b20279 at 283.808 kb on + strand, within SM_b20279 at 283.808 kb on + strand, within SM_b20279 at 283.808 kb on + strand, within SM_b20279 at 283.808 kb on + strand, within SM_b20279 at 283.809 kb on - strand, within SM_b20279 at 284.143 kb on - strand at 284.166 kb on - strand at 284.280 kb on + strand, within SM_b20280 at 284.281 kb on - strand, within SM_b20280 at 284.406 kb on + strand, within SM_b20280 at 284.662 kb on - strand, within SM_b20280 at 285.196 kb on - strand, within SM_b20280 at 285.471 kb on + strand at 285.471 kb on + strand at 285.472 kb on - strand at 285.539 kb on - strand at 285.829 kb on - strand, within SM_b20281 at 285.829 kb on - strand, within SM_b20281 at 286.020 kb on + strand, within SM_b20281 at 286.020 kb on + strand, within SM_b20281 at 286.020 kb on + strand, within SM_b20281 at 286.434 kb on + strand, within SM_b20281 at 286.435 kb on - strand, within SM_b20281 at 286.504 kb on - strand, within SM_b20281 at 286.504 kb on - strand, within SM_b20281 at 286.504 kb on - strand, within SM_b20281
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 283,075 + SM_b20278 0.21 +1.6 283,075 + SM_b20278 0.21 +1.2 283,076 - SM_b20278 0.21 +0.4 283,180 + SM_b20278 0.39 -2.2 283,222 + SM_b20278 0.46 -1.4 283,322 + SM_b20278 0.64 -0.1 283,323 - SM_b20278 0.64 +1.2 283,323 - SM_b20278 0.64 -1.6 283,323 - SM_b20278 0.64 +0.3 283,323 - SM_b20278 0.64 -1.0 283,324 + SM_b20278 0.64 +2.1 283,324 + SM_b20278 0.64 -0.4 283,325 - SM_b20278 0.64 -2.2 283,325 - SM_b20278 0.64 +1.4 283,325 - SM_b20278 0.64 -2.5 283,349 + SM_b20278 0.68 -0.2 283,350 - SM_b20278 0.68 +0.4 283,409 + SM_b20278 0.79 -0.2 283,468 - SM_b20278 0.89 -2.2 283,480 + -2.8 283,481 - -1.6 283,481 - -0.6 283,481 - +3.9 283,481 - +0.1 283,618 - SM_b20279 0.17 -1.9 283,808 + SM_b20279 0.54 -2.2 283,808 + SM_b20279 0.54 +0.1 283,808 + SM_b20279 0.54 -0.7 283,808 + SM_b20279 0.54 +0.9 283,808 + SM_b20279 0.54 +0.9 283,808 + SM_b20279 0.54 -1.4 283,809 - SM_b20279 0.55 -1.0 284,143 - +1.3 284,166 - -2.8 284,280 + SM_b20280 0.14 -3.3 284,281 - SM_b20280 0.14 -2.9 284,406 + SM_b20280 0.23 +0.8 284,662 - SM_b20280 0.40 -2.1 285,196 - SM_b20280 0.77 -3.4 285,471 + -0.9 285,471 + -0.1 285,472 - -1.3 285,539 - -1.1 285,829 - SM_b20281 0.20 -1.1 285,829 - SM_b20281 0.20 +0.9 286,020 + SM_b20281 0.38 -1.0 286,020 + SM_b20281 0.38 -0.5 286,020 + SM_b20281 0.38 -3.5 286,434 + SM_b20281 0.76 +0.9 286,435 - SM_b20281 0.76 -0.8 286,504 - SM_b20281 0.83 -3.7 286,504 - SM_b20281 0.83 -1.4 286,504 - SM_b20281 0.83 +1.9
Or see this region's nucleotide sequence