Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20268

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20267 and SM_b20268 are separated by 14 nucleotidesSM_b20268 and SM_b20269 overlap by 4 nucleotides SM_b20267: SM_b20267 - D-amino acid dehydrogenase, at 271,438 to 272,679 _b20267 SM_b20268: SM_b20268 - hydroxyproline-2-epimerase, at 272,694 to 273,695 _b20268 SM_b20269: SM_b20269 - hypothetical protein, at 273,692 to 275,383 _b20269 Position (kb) 272 273 274Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 271.864 kb on + strand, within SM_b20267at 272.001 kb on + strand, within SM_b20267at 272.045 kb on - strand, within SM_b20267at 272.266 kb on - strand, within SM_b20267at 272.936 kb on - strand, within SM_b20268at 273.075 kb on + strand, within SM_b20268at 273.075 kb on + strand, within SM_b20268at 273.076 kb on - strand, within SM_b20268at 273.076 kb on - strand, within SM_b20268at 273.196 kb on - strand, within SM_b20268at 273.257 kb on + strand, within SM_b20268at 273.750 kb on + strandat 274.293 kb on - strand, within SM_b20269at 274.293 kb on - strand, within SM_b20269at 274.293 kb on - strand, within SM_b20269at 274.293 kb on - strand, within SM_b20269at 274.293 kb on - strand, within SM_b20269at 274.457 kb on + strand, within SM_b20269at 274.457 kb on + strand, within SM_b20269

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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271,864 + SM_b20267 0.34 +1.9
272,001 + SM_b20267 0.45 +1.6
272,045 - SM_b20267 0.49 +0.9
272,266 - SM_b20267 0.67 +3.2
272,936 - SM_b20268 0.24 -0.4
273,075 + SM_b20268 0.38 -1.1
273,075 + SM_b20268 0.38 -2.7
273,076 - SM_b20268 0.38 -2.0
273,076 - SM_b20268 0.38 -0.0
273,196 - SM_b20268 0.50 -3.8
273,257 + SM_b20268 0.56 -0.6
273,750 + -0.0
274,293 - SM_b20269 0.36 -2.5
274,293 - SM_b20269 0.36 +0.4
274,293 - SM_b20269 0.36 -0.2
274,293 - SM_b20269 0.36 +0.5
274,293 - SM_b20269 0.36 +2.0
274,457 + SM_b20269 0.45 +1.4
274,457 + SM_b20269 0.45 -0.7

Or see this region's nucleotide sequence