Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20243 and SM_b20244 overlap by 4 nucleotides SM_b20244 and SM_b20245 overlap by 4 nucleotides
SM_b20243: SM_b20243 - glycosyltransferase, at 247,592 to 248,743
_b20243
SM_b20244: SM_b20244 - CDP-tyvelose-2-epimerase, at 248,740 to 249,861
_b20244
SM_b20245: SM_b20245 - UDP-glucose 4-epimerase, at 249,858 to 250,964
_b20245
Position (kb) 248
249
250 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 247.819 kb on - strand, within SM_b20243 at 247.894 kb on - strand, within SM_b20243 at 248.042 kb on + strand, within SM_b20243 at 248.043 kb on - strand, within SM_b20243 at 248.043 kb on - strand, within SM_b20243 at 248.043 kb on - strand, within SM_b20243 at 248.158 kb on + strand, within SM_b20243 at 248.161 kb on - strand, within SM_b20243 at 248.161 kb on - strand, within SM_b20243 at 248.191 kb on - strand, within SM_b20243 at 248.194 kb on + strand, within SM_b20243 at 248.627 kb on - strand, within SM_b20243 at 248.627 kb on - strand, within SM_b20243 at 248.627 kb on - strand, within SM_b20243 at 248.632 kb on - strand at 248.632 kb on - strand at 248.811 kb on - strand at 248.880 kb on + strand, within SM_b20244 at 249.119 kb on + strand, within SM_b20244 at 249.120 kb on - strand, within SM_b20244 at 249.120 kb on - strand, within SM_b20244 at 249.120 kb on - strand, within SM_b20244 at 249.207 kb on - strand, within SM_b20244 at 249.262 kb on + strand, within SM_b20244 at 249.263 kb on - strand, within SM_b20244 at 249.269 kb on + strand, within SM_b20244 at 249.270 kb on - strand, within SM_b20244 at 249.270 kb on - strand, within SM_b20244 at 249.270 kb on - strand, within SM_b20244 at 249.270 kb on - strand, within SM_b20244 at 249.300 kb on - strand, within SM_b20244 at 249.306 kb on + strand, within SM_b20244 at 249.371 kb on + strand, within SM_b20244 at 249.416 kb on + strand, within SM_b20244 at 249.416 kb on + strand, within SM_b20244 at 250.140 kb on + strand, within SM_b20245 at 250.140 kb on + strand, within SM_b20245 at 250.141 kb on - strand, within SM_b20245 at 250.141 kb on - strand, within SM_b20245 at 250.141 kb on - strand, within SM_b20245 at 250.141 kb on - strand, within SM_b20245 at 250.141 kb on - strand, within SM_b20245 at 250.143 kb on - strand, within SM_b20245 at 250.143 kb on - strand, within SM_b20245 at 250.143 kb on - strand, within SM_b20245 at 250.305 kb on - strand, within SM_b20245 at 250.307 kb on - strand, within SM_b20245 at 250.307 kb on - strand, within SM_b20245 at 250.389 kb on + strand, within SM_b20245 at 250.389 kb on + strand, within SM_b20245 at 250.391 kb on + strand, within SM_b20245 at 250.391 kb on + strand, within SM_b20245 at 250.392 kb on - strand, within SM_b20245 at 250.414 kb on + strand, within SM_b20245 at 250.415 kb on - strand, within SM_b20245 at 250.415 kb on - strand, within SM_b20245 at 250.430 kb on - strand, within SM_b20245 at 250.571 kb on + strand, within SM_b20245 at 250.571 kb on + strand, within SM_b20245 at 250.571 kb on + strand, within SM_b20245 at 250.572 kb on - strand, within SM_b20245 at 250.580 kb on - strand, within SM_b20245 at 250.580 kb on - strand, within SM_b20245 at 250.580 kb on - strand, within SM_b20245 at 250.794 kb on + strand, within SM_b20245 at 250.794 kb on + strand, within SM_b20245 at 250.794 kb on + strand, within SM_b20245 at 250.795 kb on - strand, within SM_b20245
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 247,819 - SM_b20243 0.20 +0.3 247,894 - SM_b20243 0.26 -0.6 248,042 + SM_b20243 0.39 -0.5 248,043 - SM_b20243 0.39 -0.9 248,043 - SM_b20243 0.39 -0.7 248,043 - SM_b20243 0.39 +0.4 248,158 + SM_b20243 0.49 -0.5 248,161 - SM_b20243 0.49 +1.0 248,161 - SM_b20243 0.49 +0.9 248,191 - SM_b20243 0.52 -1.8 248,194 + SM_b20243 0.52 +1.0 248,627 - SM_b20243 0.90 +0.7 248,627 - SM_b20243 0.90 +1.5 248,627 - SM_b20243 0.90 -0.0 248,632 - +1.0 248,632 - +0.9 248,811 - +1.0 248,880 + SM_b20244 0.12 -0.2 249,119 + SM_b20244 0.34 +1.0 249,120 - SM_b20244 0.34 -0.2 249,120 - SM_b20244 0.34 -3.2 249,120 - SM_b20244 0.34 -2.0 249,207 - SM_b20244 0.42 +1.0 249,262 + SM_b20244 0.47 -0.7 249,263 - SM_b20244 0.47 -0.1 249,269 + SM_b20244 0.47 +0.5 249,270 - SM_b20244 0.47 -1.5 249,270 - SM_b20244 0.47 -3.4 249,270 - SM_b20244 0.47 -0.0 249,270 - SM_b20244 0.47 -1.1 249,300 - SM_b20244 0.50 +0.4 249,306 + SM_b20244 0.50 +0.9 249,371 + SM_b20244 0.56 +0.2 249,416 + SM_b20244 0.60 -0.6 249,416 + SM_b20244 0.60 -2.2 250,140 + SM_b20245 0.25 -0.4 250,140 + SM_b20245 0.25 -0.1 250,141 - SM_b20245 0.26 -1.1 250,141 - SM_b20245 0.26 -0.5 250,141 - SM_b20245 0.26 +1.0 250,141 - SM_b20245 0.26 -0.7 250,141 - SM_b20245 0.26 +1.0 250,143 - SM_b20245 0.26 -0.9 250,143 - SM_b20245 0.26 -1.4 250,143 - SM_b20245 0.26 +0.5 250,305 - SM_b20245 0.40 -1.0 250,307 - SM_b20245 0.41 +0.8 250,307 - SM_b20245 0.41 +1.0 250,389 + SM_b20245 0.48 +0.3 250,389 + SM_b20245 0.48 +0.4 250,391 + SM_b20245 0.48 -0.6 250,391 + SM_b20245 0.48 +1.3 250,392 - SM_b20245 0.48 +2.5 250,414 + SM_b20245 0.50 +0.3 250,415 - SM_b20245 0.50 -0.6 250,415 - SM_b20245 0.50 +3.8 250,430 - SM_b20245 0.52 -1.0 250,571 + SM_b20245 0.64 -2.5 250,571 + SM_b20245 0.64 +0.5 250,571 + SM_b20245 0.64 +0.9 250,572 - SM_b20245 0.64 +2.4 250,580 - SM_b20245 0.65 +1.3 250,580 - SM_b20245 0.65 -0.6 250,580 - SM_b20245 0.65 -1.2 250,794 + SM_b20245 0.85 +0.9 250,794 + SM_b20245 0.85 -1.2 250,794 + SM_b20245 0.85 +0.4 250,795 - SM_b20245 0.85 -0.2
Or see this region's nucleotide sequence