Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20238 and SM_b20239 are separated by 2 nucleotides SM_b20239 and SM_b20240 are separated by 19 nucleotides
SM_b20238: SM_b20238 - hypothetical protein, at 242,403 to 243,197
_b20238
SM_b20239: SM_b20239 - dTDP-glucose 4,6-dehydratase, at 243,200 to 244,240
_b20239
SM_b20240: SM_b20240 - hypothetical protein, at 244,260 to 245,378
_b20240
Position (kb) 243
244
245 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 242.221 kb on + strand at 242.221 kb on + strand at 242.222 kb on - strand at 242.241 kb on - strand at 242.383 kb on + strand at 242.384 kb on - strand at 242.474 kb on - strand at 242.755 kb on + strand, within SM_b20238 at 242.756 kb on - strand, within SM_b20238 at 242.869 kb on + strand, within SM_b20238 at 242.906 kb on + strand, within SM_b20238 at 242.906 kb on + strand, within SM_b20238 at 242.947 kb on - strand, within SM_b20238 at 242.983 kb on + strand, within SM_b20238 at 242.984 kb on - strand, within SM_b20238 at 242.984 kb on - strand, within SM_b20238 at 242.984 kb on - strand, within SM_b20238 at 242.984 kb on - strand, within SM_b20238 at 243.077 kb on - strand, within SM_b20238 at 243.304 kb on + strand, within SM_b20239 at 243.567 kb on + strand, within SM_b20239 at 243.567 kb on + strand, within SM_b20239 at 243.567 kb on + strand, within SM_b20239 at 243.567 kb on + strand, within SM_b20239 at 243.568 kb on - strand, within SM_b20239 at 243.684 kb on + strand, within SM_b20239 at 243.684 kb on + strand, within SM_b20239 at 243.685 kb on - strand, within SM_b20239 at 243.777 kb on + strand, within SM_b20239 at 243.816 kb on + strand, within SM_b20239 at 243.816 kb on + strand, within SM_b20239 at 243.817 kb on - strand, within SM_b20239 at 243.817 kb on - strand, within SM_b20239 at 243.817 kb on - strand, within SM_b20239 at 243.853 kb on - strand, within SM_b20239 at 244.065 kb on + strand, within SM_b20239 at 244.113 kb on + strand, within SM_b20239 at 244.113 kb on + strand, within SM_b20239 at 244.113 kb on + strand, within SM_b20239 at 244.114 kb on - strand, within SM_b20239 at 244.114 kb on - strand, within SM_b20239 at 244.148 kb on + strand at 244.148 kb on + strand at 244.159 kb on + strand at 244.159 kb on + strand at 244.160 kb on - strand at 244.160 kb on - strand at 244.234 kb on + strand at 244.234 kb on + strand at 244.261 kb on + strand at 244.384 kb on + strand, within SM_b20240 at 244.873 kb on + strand, within SM_b20240 at 245.039 kb on - strand, within SM_b20240 at 245.104 kb on + strand, within SM_b20240 at 245.104 kb on + strand, within SM_b20240 at 245.105 kb on - strand, within SM_b20240 at 245.105 kb on - strand, within SM_b20240 at 245.179 kb on + strand, within SM_b20240 at 245.180 kb on - strand, within SM_b20240
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 242,221 + +4.0 242,221 + -0.1 242,222 - +1.1 242,241 - -0.0 242,383 + -2.7 242,384 - -1.0 242,474 - +2.6 242,755 + SM_b20238 0.44 -0.4 242,756 - SM_b20238 0.44 +0.1 242,869 + SM_b20238 0.59 -2.2 242,906 + SM_b20238 0.63 +0.4 242,906 + SM_b20238 0.63 +0.2 242,947 - SM_b20238 0.68 -2.8 242,983 + SM_b20238 0.73 +0.6 242,984 - SM_b20238 0.73 +0.6 242,984 - SM_b20238 0.73 -0.2 242,984 - SM_b20238 0.73 +0.8 242,984 - SM_b20238 0.73 -2.4 243,077 - SM_b20238 0.85 -3.1 243,304 + SM_b20239 0.10 +0.2 243,567 + SM_b20239 0.35 +1.2 243,567 + SM_b20239 0.35 -0.5 243,567 + SM_b20239 0.35 +0.8 243,567 + SM_b20239 0.35 -1.0 243,568 - SM_b20239 0.35 -4.3 243,684 + SM_b20239 0.46 -3.3 243,684 + SM_b20239 0.46 +3.9 243,685 - SM_b20239 0.47 -2.2 243,777 + SM_b20239 0.55 -0.3 243,816 + SM_b20239 0.59 +2.0 243,816 + SM_b20239 0.59 +1.0 243,817 - SM_b20239 0.59 -1.4 243,817 - SM_b20239 0.59 -1.5 243,817 - SM_b20239 0.59 -0.3 243,853 - SM_b20239 0.63 +0.2 244,065 + SM_b20239 0.83 -1.7 244,113 + SM_b20239 0.88 -2.8 244,113 + SM_b20239 0.88 -1.0 244,113 + SM_b20239 0.88 -0.3 244,114 - SM_b20239 0.88 -0.6 244,114 - SM_b20239 0.88 +0.4 244,148 + +0.5 244,148 + -0.2 244,159 + +5.3 244,159 + -0.4 244,160 - -2.7 244,160 - -0.1 244,234 + -1.6 244,234 + +0.5 244,261 + -2.0 244,384 + SM_b20240 0.11 -2.4 244,873 + SM_b20240 0.55 -0.1 245,039 - SM_b20240 0.70 -0.6 245,104 + SM_b20240 0.75 -0.7 245,104 + SM_b20240 0.75 -0.3 245,105 - SM_b20240 0.76 +1.8 245,105 - SM_b20240 0.76 -1.0 245,179 + SM_b20240 0.82 -0.2 245,180 - SM_b20240 0.82 -1.1
Or see this region's nucleotide sequence