Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20235

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20234 and SM_b20235 are separated by 1 nucleotidesSM_b20235 and SM_b20236 are separated by 119 nucleotidesSM_b20236 and SM_b20238 are separated by 327 nucleotides SM_b20234: SM_b20234 - hypothetical protein, at 239,322 to 240,518 _b20234 SM_b20235: SM_b20235 - sugar ABC transporter ATP-binding protein, at 240,520 to 241,611 _b20235 SM_b20236: SM_b20236 - hypothetical protein, at 241,731 to 242,075 _b20236 SM_b20238: SM_b20238 - hypothetical protein, at 242,403 to 243,197 _b20238 Position (kb) 240 241 242Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 239.636 kb on + strand, within SM_b20234at 239.636 kb on + strand, within SM_b20234at 239.688 kb on + strand, within SM_b20234at 239.688 kb on + strand, within SM_b20234at 239.760 kb on + strand, within SM_b20234at 239.760 kb on + strand, within SM_b20234at 239.760 kb on + strand, within SM_b20234at 239.761 kb on - strand, within SM_b20234at 239.761 kb on - strand, within SM_b20234at 239.761 kb on - strand, within SM_b20234at 239.761 kb on - strand, within SM_b20234at 239.761 kb on - strand, within SM_b20234at 239.763 kb on + strand, within SM_b20234at 239.763 kb on + strand, within SM_b20234at 239.763 kb on + strand, within SM_b20234at 239.764 kb on - strand, within SM_b20234at 239.764 kb on - strand, within SM_b20234at 239.764 kb on - strand, within SM_b20234at 239.766 kb on + strand, within SM_b20234at 239.766 kb on + strand, within SM_b20234at 239.766 kb on + strand, within SM_b20234at 239.767 kb on - strand, within SM_b20234at 239.768 kb on + strand, within SM_b20234at 239.769 kb on - strand, within SM_b20234at 239.769 kb on - strand, within SM_b20234at 239.919 kb on + strand, within SM_b20234at 239.952 kb on + strand, within SM_b20234at 239.953 kb on - strand, within SM_b20234at 239.953 kb on - strand, within SM_b20234at 239.962 kb on + strand, within SM_b20234at 239.962 kb on + strand, within SM_b20234at 239.963 kb on - strand, within SM_b20234at 239.963 kb on - strand, within SM_b20234at 240.068 kb on + strand, within SM_b20234at 240.192 kb on + strand, within SM_b20234at 240.193 kb on - strand, within SM_b20234at 240.225 kb on + strand, within SM_b20234at 240.225 kb on + strand, within SM_b20234at 240.225 kb on + strand, within SM_b20234at 240.226 kb on - strand, within SM_b20234at 240.226 kb on - strand, within SM_b20234at 240.227 kb on + strand, within SM_b20234at 240.228 kb on - strand, within SM_b20234at 240.228 kb on - strand, within SM_b20234at 240.228 kb on - strand, within SM_b20234at 240.238 kb on - strand, within SM_b20234at 240.292 kb on - strand, within SM_b20234at 240.380 kb on + strand, within SM_b20234at 240.381 kb on - strand, within SM_b20234at 240.537 kb on - strandat 240.714 kb on + strand, within SM_b20235at 240.714 kb on + strand, within SM_b20235at 240.715 kb on - strand, within SM_b20235at 240.715 kb on - strand, within SM_b20235at 240.749 kb on + strand, within SM_b20235at 240.769 kb on + strand, within SM_b20235at 240.769 kb on + strand, within SM_b20235at 240.769 kb on + strand, within SM_b20235at 240.770 kb on - strand, within SM_b20235at 240.770 kb on - strand, within SM_b20235at 240.778 kb on + strand, within SM_b20235at 241.081 kb on - strand, within SM_b20235at 241.081 kb on - strand, within SM_b20235at 241.081 kb on - strand, within SM_b20235at 241.084 kb on + strand, within SM_b20235at 241.084 kb on + strand, within SM_b20235at 241.085 kb on - strand, within SM_b20235at 241.085 kb on - strand, within SM_b20235at 241.085 kb on - strandat 241.424 kb on + strand, within SM_b20235at 241.425 kb on - strand, within SM_b20235at 241.689 kb on - strandat 241.689 kb on - strandat 241.856 kb on + strand, within SM_b20236at 241.929 kb on - strand, within SM_b20236at 241.935 kb on + strand, within SM_b20236at 242.018 kb on - strand, within SM_b20236at 242.035 kb on + strand, within SM_b20236at 242.035 kb on + strand, within SM_b20236at 242.049 kb on + strandat 242.182 kb on - strandat 242.221 kb on + strandat 242.221 kb on + strandat 242.222 kb on - strandat 242.241 kb on - strandat 242.383 kb on + strandat 242.384 kb on - strandat 242.474 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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239,636 + SM_b20234 0.26 +0.2
239,636 + SM_b20234 0.26 -0.2
239,688 + SM_b20234 0.31 -0.0
239,688 + SM_b20234 0.31 -2.8
239,760 + SM_b20234 0.37 -0.1
239,760 + SM_b20234 0.37 -0.5
239,760 + SM_b20234 0.37 +0.6
239,761 - SM_b20234 0.37 -2.4
239,761 - SM_b20234 0.37 -3.6
239,761 - SM_b20234 0.37 +0.2
239,761 - SM_b20234 0.37 -2.7
239,761 - SM_b20234 0.37 -0.4
239,763 + SM_b20234 0.37 -0.0
239,763 + SM_b20234 0.37 -0.4
239,763 + SM_b20234 0.37 -1.8
239,764 - SM_b20234 0.37 -3.7
239,764 - SM_b20234 0.37 -0.2
239,764 - SM_b20234 0.37 -0.6
239,766 + SM_b20234 0.37 -1.4
239,766 + SM_b20234 0.37 +0.2
239,766 + SM_b20234 0.37 -1.6
239,767 - SM_b20234 0.37 -0.4
239,768 + SM_b20234 0.37 +0.1
239,769 - SM_b20234 0.37 -2.5
239,769 - SM_b20234 0.37 -3.4
239,919 + SM_b20234 0.50 +0.3
239,952 + SM_b20234 0.53 -0.5
239,953 - SM_b20234 0.53 -1.5
239,953 - SM_b20234 0.53 +0.3
239,962 + SM_b20234 0.53 +0.4
239,962 + SM_b20234 0.53 +0.2
239,963 - SM_b20234 0.54 +1.7
239,963 - SM_b20234 0.54 +0.4
240,068 + SM_b20234 0.62 -0.1
240,192 + SM_b20234 0.73 -0.1
240,193 - SM_b20234 0.73 -0.2
240,225 + SM_b20234 0.75 -0.6
240,225 + SM_b20234 0.75 +0.2
240,225 + SM_b20234 0.75 +2.1
240,226 - SM_b20234 0.76 +0.4
240,226 - SM_b20234 0.76 +0.7
240,227 + SM_b20234 0.76 +1.2
240,228 - SM_b20234 0.76 -1.4
240,228 - SM_b20234 0.76 -2.5
240,228 - SM_b20234 0.76 -0.6
240,238 - SM_b20234 0.77 -2.6
240,292 - SM_b20234 0.81 -0.9
240,380 + SM_b20234 0.88 +1.0
240,381 - SM_b20234 0.88 -0.6
240,537 - +0.0
240,714 + SM_b20235 0.18 +1.7
240,714 + SM_b20235 0.18 +1.4
240,715 - SM_b20235 0.18 +1.3
240,715 - SM_b20235 0.18 +0.8
240,749 + SM_b20235 0.21 +0.2
240,769 + SM_b20235 0.23 -0.0
240,769 + SM_b20235 0.23 -2.4
240,769 + SM_b20235 0.23 +0.6
240,770 - SM_b20235 0.23 +0.1
240,770 - SM_b20235 0.23 -0.0
240,778 + SM_b20235 0.24 +0.0
241,081 - SM_b20235 0.51 +1.4
241,081 - SM_b20235 0.51 +0.4
241,081 - SM_b20235 0.51 -1.0
241,084 + SM_b20235 0.52 +0.6
241,084 + SM_b20235 0.52 -0.4
241,085 - SM_b20235 0.52 -0.1
241,085 - SM_b20235 0.52 -0.6
241,085 - -0.6
241,424 + SM_b20235 0.83 +2.1
241,425 - SM_b20235 0.83 +1.8
241,689 - -2.8
241,689 - +1.5
241,856 + SM_b20236 0.36 +0.3
241,929 - SM_b20236 0.57 +0.4
241,935 + SM_b20236 0.59 -1.4
242,018 - SM_b20236 0.83 +0.7
242,035 + SM_b20236 0.88 -0.8
242,035 + SM_b20236 0.88 +0.2
242,049 + -3.0
242,182 - -0.5
242,221 + +4.0
242,221 + -0.1
242,222 - +1.1
242,241 - -0.0
242,383 + -2.7
242,384 - -1.0
242,474 - +2.6

Or see this region's nucleotide sequence