Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20232

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20231 and SM_b20232 are separated by 57 nucleotidesSM_b20232 and SM_b20233 overlap by 11 nucleotidesSM_b20233 and SM_b20234 are separated by 30 nucleotides SM_b20231: SM_b20231 - sugar ABC transporter substrate-binding protein, at 236,096 to 237,451 _b20231 SM_b20232: SM_b20232 - sugar ABC transporter permease, at 237,509 to 238,453 _b20232 SM_b20233: SM_b20233 - sugar ABC transporter permease, at 238,443 to 239,291 _b20233 SM_b20234: SM_b20234 - hypothetical protein, at 239,322 to 240,518 _b20234 Position (kb) 237 238 239Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 236.600 kb on + strand, within SM_b20231at 236.601 kb on - strand, within SM_b20231at 236.738 kb on + strand, within SM_b20231at 236.939 kb on + strand, within SM_b20231at 237.047 kb on + strand, within SM_b20231at 237.047 kb on + strand, within SM_b20231at 237.047 kb on + strand, within SM_b20231at 237.047 kb on + strand, within SM_b20231at 237.048 kb on - strand, within SM_b20231at 237.048 kb on - strand, within SM_b20231at 237.048 kb on - strand, within SM_b20231at 237.324 kb on - strandat 237.324 kb on - strandat 237.428 kb on + strandat 237.429 kb on - strandat 237.657 kb on + strand, within SM_b20232at 237.702 kb on - strand, within SM_b20232at 237.702 kb on - strand, within SM_b20232at 237.702 kb on - strand, within SM_b20232at 237.725 kb on + strand, within SM_b20232at 237.725 kb on + strand, within SM_b20232at 237.726 kb on - strand, within SM_b20232at 237.813 kb on + strand, within SM_b20232at 237.813 kb on + strand, within SM_b20232at 237.814 kb on - strand, within SM_b20232at 237.814 kb on - strand, within SM_b20232at 237.957 kb on + strand, within SM_b20232at 238.041 kb on + strand, within SM_b20232at 238.042 kb on - strand, within SM_b20232at 238.070 kb on + strand, within SM_b20232at 238.070 kb on + strand, within SM_b20232at 238.070 kb on + strand, within SM_b20232at 238.115 kb on + strand, within SM_b20232at 238.262 kb on + strand, within SM_b20232at 238.262 kb on + strand, within SM_b20232at 238.263 kb on - strand, within SM_b20232at 238.263 kb on - strand, within SM_b20232at 238.263 kb on - strand, within SM_b20232at 238.315 kb on + strand, within SM_b20232at 238.316 kb on - strandat 238.316 kb on - strand, within SM_b20232at 238.319 kb on + strand, within SM_b20232at 238.320 kb on - strand, within SM_b20232at 238.320 kb on - strand, within SM_b20232at 238.452 kb on - strandat 238.611 kb on - strand, within SM_b20233at 238.644 kb on + strand, within SM_b20233at 238.644 kb on + strand, within SM_b20233at 238.644 kb on + strand, within SM_b20233at 238.644 kb on + strand, within SM_b20233at 238.645 kb on - strand, within SM_b20233at 238.645 kb on - strand, within SM_b20233at 238.648 kb on + strand, within SM_b20233at 238.649 kb on - strand, within SM_b20233at 238.649 kb on - strand, within SM_b20233at 238.649 kb on - strand, within SM_b20233at 238.674 kb on + strand, within SM_b20233at 238.674 kb on + strand, within SM_b20233at 238.674 kb on + strand, within SM_b20233at 238.675 kb on - strand, within SM_b20233at 238.692 kb on + strand, within SM_b20233at 238.942 kb on - strand, within SM_b20233at 238.944 kb on + strand, within SM_b20233at 238.945 kb on - strand, within SM_b20233at 238.945 kb on - strand, within SM_b20233at 238.945 kb on - strand, within SM_b20233at 238.945 kb on - strand, within SM_b20233at 238.945 kb on - strand, within SM_b20233at 239.187 kb on + strand, within SM_b20233at 239.188 kb on - strand, within SM_b20233at 239.188 kb on - strand, within SM_b20233at 239.305 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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236,600 + SM_b20231 0.37 -0.9
236,601 - SM_b20231 0.37 -3.3
236,738 + SM_b20231 0.47 +2.0
236,939 + SM_b20231 0.62 +1.2
237,047 + SM_b20231 0.70 -0.4
237,047 + SM_b20231 0.70 +0.3
237,047 + SM_b20231 0.70 +0.2
237,047 + SM_b20231 0.70 -1.0
237,048 - SM_b20231 0.70 -0.0
237,048 - SM_b20231 0.70 +2.1
237,048 - SM_b20231 0.70 +1.1
237,324 - -0.2
237,324 - +0.1
237,428 + +1.0
237,429 - -2.2
237,657 + SM_b20232 0.16 -1.0
237,702 - SM_b20232 0.20 -0.7
237,702 - SM_b20232 0.20 -0.4
237,702 - SM_b20232 0.20 +3.6
237,725 + SM_b20232 0.23 +0.8
237,725 + SM_b20232 0.23 +0.7
237,726 - SM_b20232 0.23 -0.2
237,813 + SM_b20232 0.32 +2.4
237,813 + SM_b20232 0.32 -2.0
237,814 - SM_b20232 0.32 -1.2
237,814 - SM_b20232 0.32 +1.4
237,957 + SM_b20232 0.47 -2.7
238,041 + SM_b20232 0.56 -1.8
238,042 - SM_b20232 0.56 +1.0
238,070 + SM_b20232 0.59 -1.6
238,070 + SM_b20232 0.59 +0.2
238,070 + SM_b20232 0.59 +1.1
238,115 + SM_b20232 0.64 +2.0
238,262 + SM_b20232 0.80 +0.1
238,262 + SM_b20232 0.80 +0.6
238,263 - SM_b20232 0.80 -1.4
238,263 - SM_b20232 0.80 -0.5
238,263 - SM_b20232 0.80 -3.2
238,315 + SM_b20232 0.85 -0.5
238,316 - +2.1
238,316 - SM_b20232 0.85 +1.5
238,319 + SM_b20232 0.86 +0.7
238,320 - SM_b20232 0.86 -0.1
238,320 - SM_b20232 0.86 -1.4
238,452 - +0.3
238,611 - SM_b20233 0.20 -0.0
238,644 + SM_b20233 0.24 -0.6
238,644 + SM_b20233 0.24 +0.7
238,644 + SM_b20233 0.24 -0.6
238,644 + SM_b20233 0.24 +2.4
238,645 - SM_b20233 0.24 -1.8
238,645 - SM_b20233 0.24 -1.3
238,648 + SM_b20233 0.24 +1.1
238,649 - SM_b20233 0.24 +0.6
238,649 - SM_b20233 0.24 +0.6
238,649 - SM_b20233 0.24 +0.9
238,674 + SM_b20233 0.27 +0.1
238,674 + SM_b20233 0.27 -0.4
238,674 + SM_b20233 0.27 +0.4
238,675 - SM_b20233 0.27 +0.5
238,692 + SM_b20233 0.29 -2.3
238,942 - SM_b20233 0.59 +0.3
238,944 + SM_b20233 0.59 -2.9
238,945 - SM_b20233 0.59 +1.0
238,945 - SM_b20233 0.59 -2.1
238,945 - SM_b20233 0.59 -2.5
238,945 - SM_b20233 0.59 +3.0
238,945 - SM_b20233 0.59 +0.1
239,187 + SM_b20233 0.88 -0.2
239,188 - SM_b20233 0.88 +0.4
239,188 - SM_b20233 0.88 +1.3
239,305 - -0.9

Or see this region's nucleotide sequence