Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20227 and SM_b20228 overlap by 8 nucleotides SM_b20228 and SM_b20229 overlap by 4 nucleotides SM_b20229 and SM_b20230 are separated by 231 nucleotides
SM_b20227: SM_b20227 - nutrient deprivation-induced protein, at 232,839 to 233,417
_b20227
SM_b20228: SM_b20228 - nutrient deprivation-induced protein, at 233,410 to 233,829
_b20228
SM_b20229: SM_b20229 - nutrient deprivation-induced protein, at 233,826 to 234,800
_b20229
SM_b20230: SM_b20230 - smc22-r protein, at 235,032 to 236,036
_b20230
Position (kb) 233
234
235 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 232.919 kb on - strand, within SM_b20227 at 233.406 kb on + strand at 233.406 kb on + strand at 233.406 kb on + strand at 233.406 kb on + strand at 233.407 kb on - strand at 233.407 kb on - strand at 233.415 kb on + strand at 233.469 kb on + strand, within SM_b20228 at 233.469 kb on + strand, within SM_b20228 at 233.469 kb on + strand, within SM_b20228 at 233.471 kb on + strand, within SM_b20228 at 233.471 kb on + strand, within SM_b20228 at 233.472 kb on - strand, within SM_b20228 at 233.472 kb on - strand, within SM_b20228 at 233.617 kb on + strand, within SM_b20228 at 233.749 kb on - strand, within SM_b20228 at 234.130 kb on - strand, within SM_b20229 at 234.130 kb on - strand, within SM_b20229 at 234.198 kb on + strand, within SM_b20229 at 234.298 kb on - strand, within SM_b20229 at 234.298 kb on - strand, within SM_b20229 at 234.308 kb on + strand, within SM_b20229 at 234.309 kb on - strand, within SM_b20229 at 234.309 kb on - strand, within SM_b20229 at 234.338 kb on + strand, within SM_b20229 at 234.339 kb on - strand, within SM_b20229 at 234.593 kb on - strand, within SM_b20229 at 235.069 kb on + strand at 235.070 kb on - strand at 235.130 kb on + strand at 235.130 kb on + strand at 235.131 kb on - strand at 235.164 kb on + strand, within SM_b20230 at 235.165 kb on - strand, within SM_b20230 at 235.168 kb on + strand, within SM_b20230 at 235.252 kb on - strand, within SM_b20230 at 235.264 kb on + strand, within SM_b20230 at 235.306 kb on + strand, within SM_b20230 at 235.307 kb on - strand, within SM_b20230 at 235.307 kb on - strand, within SM_b20230 at 235.352 kb on + strand, within SM_b20230 at 235.376 kb on - strand, within SM_b20230 at 235.376 kb on - strand, within SM_b20230 at 235.450 kb on + strand, within SM_b20230 at 235.450 kb on + strand, within SM_b20230 at 235.450 kb on + strand, within SM_b20230 at 235.451 kb on - strand, within SM_b20230 at 235.451 kb on - strand, within SM_b20230 at 235.531 kb on - strand, within SM_b20230 at 235.545 kb on + strand, within SM_b20230 at 235.692 kb on + strand, within SM_b20230 at 235.692 kb on + strand, within SM_b20230 at 235.692 kb on + strand, within SM_b20230 at 235.693 kb on - strand, within SM_b20230 at 235.693 kb on - strand, within SM_b20230 at 235.693 kb on - strand, within SM_b20230 at 235.698 kb on - strand, within SM_b20230 at 235.754 kb on - strand, within SM_b20230 at 235.754 kb on - strand, within SM_b20230
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 232,919 - SM_b20227 0.14 -1.6 233,406 + +0.0 233,406 + +2.4 233,406 + -0.7 233,406 + -1.7 233,407 - +1.4 233,407 - -0.3 233,415 + -0.9 233,469 + SM_b20228 0.14 +2.4 233,469 + SM_b20228 0.14 -0.5 233,469 + SM_b20228 0.14 -0.4 233,471 + SM_b20228 0.15 +0.5 233,471 + SM_b20228 0.15 +0.7 233,472 - SM_b20228 0.15 -1.0 233,472 - SM_b20228 0.15 +0.2 233,617 + SM_b20228 0.49 -2.0 233,749 - SM_b20228 0.81 -2.1 234,130 - SM_b20229 0.31 -0.0 234,130 - SM_b20229 0.31 +1.0 234,198 + SM_b20229 0.38 +0.1 234,298 - SM_b20229 0.48 -2.0 234,298 - SM_b20229 0.48 +0.7 234,308 + SM_b20229 0.49 -2.0 234,309 - SM_b20229 0.50 +3.0 234,309 - SM_b20229 0.50 -1.4 234,338 + SM_b20229 0.53 +0.7 234,339 - SM_b20229 0.53 -0.9 234,593 - SM_b20229 0.79 +1.9 235,069 + +1.9 235,070 - -2.9 235,130 + +1.0 235,130 + +2.5 235,131 - -1.0 235,164 + SM_b20230 0.13 +1.0 235,165 - SM_b20230 0.13 +1.2 235,168 + SM_b20230 0.14 -0.0 235,252 - SM_b20230 0.22 -0.8 235,264 + SM_b20230 0.23 -1.1 235,306 + SM_b20230 0.27 +1.0 235,307 - SM_b20230 0.27 -0.2 235,307 - SM_b20230 0.27 +1.5 235,352 + SM_b20230 0.32 -0.8 235,376 - SM_b20230 0.34 +1.4 235,376 - SM_b20230 0.34 +4.1 235,450 + SM_b20230 0.42 +2.3 235,450 + SM_b20230 0.42 +1.4 235,450 + SM_b20230 0.42 -1.4 235,451 - SM_b20230 0.42 +0.5 235,451 - SM_b20230 0.42 -0.3 235,531 - SM_b20230 0.50 +0.5 235,545 + SM_b20230 0.51 -2.0 235,692 + SM_b20230 0.66 +0.5 235,692 + SM_b20230 0.66 -0.6 235,692 + SM_b20230 0.66 -1.4 235,693 - SM_b20230 0.66 -2.4 235,693 - SM_b20230 0.66 +0.4 235,693 - SM_b20230 0.66 +0.1 235,698 - SM_b20230 0.66 +0.8 235,754 - SM_b20230 0.72 -0.2 235,754 - SM_b20230 0.72 +1.6
Or see this region's nucleotide sequence