Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20186

Experiment: Polymyxin B sulfate 0.00005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20184 and SM_b20185 overlap by 4 nucleotidesSM_b20185 and SM_b20186 are separated by 120 nucleotidesSM_b20186 and SM_b20194 are separated by 311 nucleotidesSM_b20194 and SM_b20195 are separated by 3 nucleotides SM_b20184: SM_b20184 - ABC transporter ATP-binding protein, at 200,618 to 201,346 _b20184 SM_b20185: SM_b20185 - hypothetical protein, at 201,343 to 202,134 _b20185 SM_b20186: SM_b20186 - glutathione-dependent formaldehyde-activating protein, at 202,255 to 202,824 _b20186 SM_b20194: SM_b20194 - hypothetical protein, at 203,136 to 203,702 _b20194 SM_b20195: SM_b20195 - pentose-5-phosphate-3-epimerase, at 203,706 to 204,392 _b20195 Position (kb) 202 203Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 201.517 kb on + strand, within SM_b20185at 201.517 kb on + strand, within SM_b20185at 201.517 kb on + strand, within SM_b20185at 201.517 kb on + strand, within SM_b20185at 201.517 kb on + strand, within SM_b20185at 201.518 kb on - strand, within SM_b20185at 201.518 kb on - strand, within SM_b20185at 201.519 kb on + strand, within SM_b20185at 201.519 kb on + strand, within SM_b20185at 201.520 kb on - strand, within SM_b20185at 201.520 kb on - strand, within SM_b20185at 201.522 kb on + strand, within SM_b20185at 201.522 kb on + strand, within SM_b20185at 201.522 kb on + strand, within SM_b20185at 201.522 kb on + strand, within SM_b20185at 201.523 kb on - strand, within SM_b20185at 201.523 kb on - strand, within SM_b20185at 201.523 kb on - strand, within SM_b20185at 201.523 kb on - strand, within SM_b20185at 201.523 kb on - strand, within SM_b20185at 201.526 kb on + strand, within SM_b20185at 201.526 kb on + strand, within SM_b20185at 201.526 kb on + strand, within SM_b20185at 201.526 kb on + strand, within SM_b20185at 201.535 kb on + strand, within SM_b20185at 201.535 kb on + strand, within SM_b20185at 201.536 kb on - strandat 201.537 kb on + strand, within SM_b20185at 201.695 kb on + strand, within SM_b20185at 201.965 kb on + strand, within SM_b20185at 201.988 kb on + strand, within SM_b20185at 201.989 kb on - strand, within SM_b20185at 202.096 kb on + strandat 202.097 kb on - strandat 202.097 kb on - strandat 202.098 kb on + strandat 202.099 kb on - strandat 202.099 kb on - strandat 202.146 kb on - strandat 202.146 kb on - strandat 202.185 kb on + strandat 202.265 kb on + strandat 202.558 kb on + strand, within SM_b20186at 202.559 kb on - strand, within SM_b20186at 202.559 kb on - strand, within SM_b20186at 202.559 kb on - strand, within SM_b20186at 202.559 kb on - strand, within SM_b20186at 202.559 kb on - strand, within SM_b20186at 202.592 kb on - strand, within SM_b20186at 202.712 kb on + strand, within SM_b20186at 202.975 kb on + strandat 203.056 kb on + strandat 203.057 kb on - strandat 203.178 kb on + strandat 203.239 kb on + strand, within SM_b20194at 203.395 kb on + strand, within SM_b20194at 203.395 kb on + strand, within SM_b20194at 203.458 kb on + strand, within SM_b20194at 203.557 kb on + strand, within SM_b20194at 203.576 kb on + strand, within SM_b20194at 203.576 kb on + strand, within SM_b20194at 203.617 kb on - strand, within SM_b20194at 203.693 kb on + strandat 203.767 kb on + strandat 203.768 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
remove
201,517 + SM_b20185 0.22 -1.6
201,517 + SM_b20185 0.22 +1.0
201,517 + SM_b20185 0.22 -2.7
201,517 + SM_b20185 0.22 +2.0
201,517 + SM_b20185 0.22 -4.2
201,518 - SM_b20185 0.22 -1.0
201,518 - SM_b20185 0.22 -1.0
201,519 + SM_b20185 0.22 +0.6
201,519 + SM_b20185 0.22 -0.0
201,520 - SM_b20185 0.22 +1.5
201,520 - SM_b20185 0.22 +1.0
201,522 + SM_b20185 0.23 -0.3
201,522 + SM_b20185 0.23 +0.5
201,522 + SM_b20185 0.23 +1.4
201,522 + SM_b20185 0.23 -0.6
201,523 - SM_b20185 0.23 -2.3
201,523 - SM_b20185 0.23 -0.6
201,523 - SM_b20185 0.23 -1.9
201,523 - SM_b20185 0.23 -2.6
201,523 - SM_b20185 0.23 +1.0
201,526 + SM_b20185 0.23 +3.5
201,526 + SM_b20185 0.23 -4.4
201,526 + SM_b20185 0.23 +0.8
201,526 + SM_b20185 0.23 +0.6
201,535 + SM_b20185 0.24 +0.6
201,535 + SM_b20185 0.24 -3.1
201,536 - +2.6
201,537 + SM_b20185 0.24 -0.0
201,695 + SM_b20185 0.44 +0.6
201,965 + SM_b20185 0.79 -0.1
201,988 + SM_b20185 0.81 -3.9
201,989 - SM_b20185 0.82 -1.6
202,096 + +0.1
202,097 - -0.4
202,097 - +0.6
202,098 + -0.1
202,099 - -0.7
202,099 - -0.4
202,146 - +0.7
202,146 - -0.4
202,185 + +0.1
202,265 + -2.5
202,558 + SM_b20186 0.53 +1.5
202,559 - SM_b20186 0.53 +1.4
202,559 - SM_b20186 0.53 -1.9
202,559 - SM_b20186 0.53 -0.6
202,559 - SM_b20186 0.53 -3.5
202,559 - SM_b20186 0.53 -0.3
202,592 - SM_b20186 0.59 -1.2
202,712 + SM_b20186 0.80 +0.2
202,975 + +1.0
203,056 + -2.0
203,057 - -0.0
203,178 + -0.3
203,239 + SM_b20194 0.18 +0.4
203,395 + SM_b20194 0.46 -1.1
203,395 + SM_b20194 0.46 -0.6
203,458 + SM_b20194 0.57 +0.7
203,557 + SM_b20194 0.74 -2.1
203,576 + SM_b20194 0.78 -0.7
203,576 + SM_b20194 0.78 -1.2
203,617 - SM_b20194 0.85 -0.6
203,693 + +1.0
203,767 + -2.4
203,768 - +0.0

Or see this region's nucleotide sequence