Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20176 and SM_b20177 are separated by 173 nucleotides SM_b20177 and SM_b20178 are separated by 126 nucleotides SM_b20178 and SM_b20179 are separated by 1 nucleotides SM_b20179 and SM_b20180 are separated by 3 nucleotides
SM_b20176: SM_b20176 - hypothetical protein, at 194,208 to 194,753
_b20176
SM_b20177: SM_b20177 - hypothetical protein, at 194,927 to 195,448
_b20177
SM_b20178: SM_b20178 - hypothetical protein, at 195,575 to 196,762
_b20178
SM_b20179: SM_b20179 - hypothetical protein, at 196,764 to 197,738
_b20179
SM_b20180: SM_b20180 - hypothetical protein, at 197,742 to 198,221
_b20180
Position (kb) 195
196
197 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 194.652 kb on + strand, within SM_b20176 at 194.658 kb on + strand, within SM_b20176 at 194.658 kb on + strand, within SM_b20176 at 194.659 kb on - strand, within SM_b20176 at 194.659 kb on - strand, within SM_b20176 at 194.822 kb on - strand at 194.959 kb on - strand at 194.959 kb on - strand at 195.065 kb on + strand, within SM_b20177 at 195.070 kb on + strand, within SM_b20177 at 195.071 kb on - strand, within SM_b20177 at 195.108 kb on + strand, within SM_b20177 at 195.108 kb on + strand, within SM_b20177 at 195.295 kb on + strand, within SM_b20177 at 195.296 kb on - strand, within SM_b20177 at 195.298 kb on - strand, within SM_b20177 at 195.298 kb on - strand, within SM_b20177 at 195.345 kb on - strand, within SM_b20177 at 195.345 kb on - strand, within SM_b20177 at 195.482 kb on + strand at 195.483 kb on - strand at 195.491 kb on + strand at 195.492 kb on - strand at 195.514 kb on - strand at 195.524 kb on + strand at 195.794 kb on + strand, within SM_b20178 at 195.795 kb on - strand, within SM_b20178 at 195.900 kb on + strand, within SM_b20178 at 195.900 kb on + strand, within SM_b20178 at 195.901 kb on - strand, within SM_b20178 at 195.901 kb on - strand, within SM_b20178 at 195.901 kb on - strand, within SM_b20178 at 196.313 kb on + strand, within SM_b20178 at 196.313 kb on + strand, within SM_b20178 at 196.314 kb on - strand, within SM_b20178 at 196.466 kb on + strand, within SM_b20178 at 196.467 kb on - strand, within SM_b20178 at 196.467 kb on - strand, within SM_b20178 at 196.686 kb on - strand at 196.686 kb on - strand at 196.760 kb on + strand at 196.761 kb on - strand at 196.962 kb on + strand, within SM_b20179 at 196.963 kb on - strand, within SM_b20179 at 197.013 kb on + strand, within SM_b20179 at 197.014 kb on - strand at 197.016 kb on - strand, within SM_b20179 at 197.089 kb on - strand, within SM_b20179 at 197.089 kb on - strand, within SM_b20179 at 197.147 kb on - strand, within SM_b20179 at 197.147 kb on - strand, within SM_b20179 at 197.219 kb on + strand, within SM_b20179 at 197.220 kb on - strand, within SM_b20179 at 197.237 kb on + strand, within SM_b20179 at 197.237 kb on + strand, within SM_b20179 at 197.237 kb on + strand, within SM_b20179 at 197.238 kb on - strand, within SM_b20179 at 197.340 kb on + strand, within SM_b20179 at 197.341 kb on - strand, within SM_b20179 at 197.562 kb on + strand, within SM_b20179 at 197.562 kb on + strand, within SM_b20179 at 197.562 kb on + strand, within SM_b20179
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 194,652 + SM_b20176 0.81 +0.7 194,658 + SM_b20176 0.82 -0.9 194,658 + SM_b20176 0.82 -2.2 194,659 - SM_b20176 0.83 +0.0 194,659 - SM_b20176 0.83 +2.2 194,822 - +2.7 194,959 - -0.4 194,959 - -0.3 195,065 + SM_b20177 0.26 -0.0 195,070 + SM_b20177 0.27 -2.2 195,071 - SM_b20177 0.28 -1.6 195,108 + SM_b20177 0.35 -0.4 195,108 + SM_b20177 0.35 -0.3 195,295 + SM_b20177 0.70 +1.8 195,296 - SM_b20177 0.71 +0.2 195,298 - SM_b20177 0.71 +1.2 195,298 - SM_b20177 0.71 -1.0 195,345 - SM_b20177 0.80 -0.1 195,345 - SM_b20177 0.80 +1.0 195,482 + +3.2 195,483 - -0.6 195,491 + -0.2 195,492 - -3.9 195,514 - -0.6 195,524 + -0.2 195,794 + SM_b20178 0.18 -0.7 195,795 - SM_b20178 0.19 -2.2 195,900 + SM_b20178 0.27 -0.5 195,900 + SM_b20178 0.27 -0.6 195,901 - SM_b20178 0.27 -0.6 195,901 - SM_b20178 0.27 -0.6 195,901 - SM_b20178 0.27 +0.9 196,313 + SM_b20178 0.62 -0.4 196,313 + SM_b20178 0.62 -2.6 196,314 - SM_b20178 0.62 +1.0 196,466 + SM_b20178 0.75 -0.8 196,467 - SM_b20178 0.75 -1.0 196,467 - SM_b20178 0.75 -0.8 196,686 - -3.0 196,686 - +1.0 196,760 + +1.0 196,761 - +4.2 196,962 + SM_b20179 0.20 -0.1 196,963 - SM_b20179 0.20 +1.2 197,013 + SM_b20179 0.26 -0.6 197,014 - +1.0 197,016 - SM_b20179 0.26 +0.2 197,089 - SM_b20179 0.33 +1.0 197,089 - SM_b20179 0.33 -2.6 197,147 - SM_b20179 0.39 -1.2 197,147 - SM_b20179 0.39 -0.0 197,219 + SM_b20179 0.47 +1.0 197,220 - SM_b20179 0.47 -0.8 197,237 + SM_b20179 0.49 -2.0 197,237 + SM_b20179 0.49 -0.1 197,237 + SM_b20179 0.49 -0.7 197,238 - SM_b20179 0.49 -0.9 197,340 + SM_b20179 0.59 +1.1 197,341 - SM_b20179 0.59 +0.6 197,562 + SM_b20179 0.82 +0.0 197,562 + SM_b20179 0.82 +0.0 197,562 + SM_b20179 0.82 -2.6
Or see this region's nucleotide sequence